Rmu_sc0004890.1_g000015

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004890.1
Physical Location & Seq
Forward (+)
71209 .. 71523
315 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004890.1_g000015.1.cds

Sequence Viewer

Length: 315 bp
atgattggatcatcacaagtaataaaaggccgaggtactgccaaatttttgctgcctaatggcacaacatttcaagtcacagacactctatatgcacgaagagctaatcgaacattgttaagttttaaagatattcgtgccaatggttatccagtagaaacacactgcgagaatggaactgaataccttgatattagctctaatgaatgtggaaggaaacgcattttagagaaacttatgagtcaatctagtagactgtacctcactacgattcggatcattgaatcctatgctgccaccaacaatgaaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.74

Weight (kDa)

9.3

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AclWI GGATC 2 cut(s) 16, 284
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 2 cut(s) 37, 260
AgsI TTSAA 2 cut(s) 74, 284
AluBI AGCT 2 cut(s) 104, 198
AluI AGCT 2 cut(s) 104, 198
AlwI GGATC 2 cut(s) 16, 284
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 52, 293
ApoI RAATTY 1 cut(s) 44
BbvI GCAGC 2 cut(s) 39, 280
BfaI CTAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 53, 294
BlsI GCNGC 2 cut(s) 54, 295
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 275
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 39, 280
BshFI GGCC 1 cut(s) 30
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 8, 276
BspANI GGCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 16, 284
BspQI GCTCTTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 8, 276
Bst4CI ACNGT 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 94
BstKTI GATC 2 cut(s) 11, 279
BstMBI GATC 2 cut(s) 8, 276
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 39, 280
BsuRI GGCC 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
Csp6I GTAC 2 cut(s) 36, 259
CviJI RGCY 3 cut(s) 30, 104, 198
CviKI_1 RGCY 3 cut(s) 30, 104, 198
CviQI GTAC 2 cut(s) 36, 259
DpnI GATC 2 cut(s) 10, 278
DpnII GATC 2 cut(s) 8, 276
DraI TTTAAA 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
FaiI YATR 4 cut(s) 91, 93, 239, 291
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 53, 294
Fsp4HI GCNGC 2 cut(s) 53, 294
FspBI CTAG 1 cut(s) 249
GluI GCNGC 2 cut(s) 53, 294
HaeIII GGCC 1 cut(s) 30
HinfI GANTC 3 cut(s) 241, 271, 284
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 8, 276
LguI GCTCTTC 1 cut(s) 94
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 2 cut(s) 39, 280
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 10, 278
MboI GATC 2 cut(s) 8, 276
MboII GAAGA 1 cut(s) 111
MluCI AATT 1 cut(s) 44
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 2 cut(s) 26, 272
MseI TTAA 2 cut(s) 119, 126
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 8, 276
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 271, 284
PkrI GCNGC 2 cut(s) 54, 295
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
RsaI GTAC 2 cut(s) 37, 260
RsaNI GTAC 2 cut(s) 36, 259
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 119, 126
SatI GCNGC 2 cut(s) 53, 294
Sau3AI GATC 2 cut(s) 8, 276
SchI GAGTC 1 cut(s) 250
SetI ASST 5 cut(s) 37, 106, 189, 200, 264
SgeI CNNG 9 cut(s) 29, 44, 86, 108, 149, 164, 181, 200, 261
Sse9I AATT 1 cut(s) 44
SspMI CTAG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 44
TfiI GAWTC 2 cut(s) 271, 284
Tru1I TTAA 2 cut(s) 119, 126
Tru9I TTAA 2 cut(s) 119, 126
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 52, 293
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 170
XapI RAATTY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.