Rmu_sc0010103.1_g000003

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010103.1
Physical Location & Seq
Reverse (-)
5334 .. 5687
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010103.1_g000003.1.cds

Sequence Viewer

Length: 354 bp
atggattctggagaactacaatgtattacggatagtgcgactacgcacaccattctacgccataggcaattgttcttagagatgttgcctacacattcctctgtgactacgatggctgggccatcaagtttagttcaaggacatggaatggcccaattcctgttgccaaatggcaccttgattaaagtcacagaagctctctatgatcctaaggcaaatcgaaccttattgagttttaaagatataagagccaatggattccatgcggaaacgcatactgagaacggaaaagagttcctttgcattacctctaatgattgcggatggaagcgcatcttagagaagcttctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.01

Weight (kDa)

6.57

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 2 cut(s) 266, 321
AclWI GGATC 1 cut(s) 200
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 2 cut(s) 197, 346
AluI AGCT 2 cut(s) 197, 346
AlwI GGATC 1 cut(s) 200
AoxI GGCC 2 cut(s) 119, 150
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 119, 151
AxyI CCTNAGG 1 cut(s) 210
BanI GGYRCC 1 cut(s) 173
BccI CCATC 3 cut(s) 106, 130, 318
BmgT120I GGNCC 2 cut(s) 119, 151
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 30
Bse21I CCTNAGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 2 cut(s) 121, 152
BshNI GGYRCC 1 cut(s) 173
BsnI GGCC 2 cut(s) 121, 152
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 2 cut(s) 266, 321
BspANI GGCC 2 cut(s) 121, 152
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 173
BssMI GATC 1 cut(s) 205
BstDEI CTNAG 4 cut(s) 76, 210, 279, 337
BstF5I GGATG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 210
BsuRI GGCC 2 cut(s) 121, 152
BtsCI GGATG 1 cut(s) 329
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 119, 151
CviAII CATG 2 cut(s) 143, 263
CviJI RGCY 6 cut(s) 116, 121, 152, 197, 251, 346
CviKI_1 RGCY 6 cut(s) 116, 121, 152, 197, 251, 346
DdeI CTNAG 4 cut(s) 76, 210, 279, 337
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DraI TTTAAA 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 210
FaeI CATG 2 cut(s) 146, 266
FaiI YATR 6 cut(s) 63, 144, 204, 245, 264, 276
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 320, 352
FatI CATG 2 cut(s) 142, 262
FokI GGATG 1 cut(s) 336
GlaI GCGC 1 cut(s) 332
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 121, 152
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 146, 266
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 2 cut(s) 5, 258
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 303
HpyF3I CTNAG 4 cut(s) 76, 210, 279, 337
Hsp92II CATG 2 cut(s) 146, 266
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 102, 173
LweI GCATC 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 103, 187
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MfeI CAATTG 1 cut(s) 68
MluCI AATT 2 cut(s) 68, 155
MnlI CCTC 2 cut(s) 109, 319
MseI TTAA 2 cut(s) 183, 237
MunI CAATTG 1 cut(s) 68
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 146, 266
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 103, 187
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 2 cut(s) 5, 258
PspFI CCCAGC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 119, 151
SaqAI TTAA 2 cut(s) 183, 237
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 119, 151
SetI ASST 5 cut(s) 179, 199, 227, 311, 348
SfaNI GCATC 1 cut(s) 342
SgeI CNNG 8 cut(s) 21, 129, 138, 149, 155, 172, 190, 275
Sse9I AATT 2 cut(s) 68, 155
SsiI CCGC 2 cut(s) 266, 321
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 68, 155
TfiI GAWTC 2 cut(s) 5, 258
Tru1I TTAA 2 cut(s) 183, 237
Tru9I TTAA 2 cut(s) 183, 237
TseFI GTSAC 2 cut(s) 103, 187
Tsp45I GTSAC 2 cut(s) 103, 187
TspGWI ACGGA 2 cut(s) 44, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.