Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004298.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

53434 .. 54383

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004298.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgaagtcgccggagttgtgttttccggccgggtccgaaaacaccaacctgcaccgccttctaccgccgctaccactgagaatcggcactagagaacaccacagagacgactggaccaaggaggcgaacctgtctggaaagtttggtcgccggagacagccgcagtccgccggaaaagtcgggtcgggtcgaccggtttcggacgctctatatgcactaagagctaatcgaaccttgttaagtttcaaagctatttgtgccatcagttatccagtagaaacacactgtgagaatggaactgaataccttgatattatctctaatgaatgtggaaggaaacacattttagagaaacttatgagtcaatctagtggactatacctcactacgattcggatcattgaatcctatgctatcaccaacaatgaaatgtggaaccctgactcatacaggctttggcatgaccgcctagggcaccccggtcatgacatgataatccgtatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

168

Amino Acids

19.14

Weight (kDa)

8.96

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	6 cut(s)	55, 65, 68, 161, 168, 466
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	287
AgeI	ACCGGT	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	247, 404
AluBI	AGCT	2 cut(s)	224, 251
AluI	AGCT	2 cut(s)	224, 251
Alw26I	GTCTC	2 cut(s)	99, 148
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	27
AsiGI	ACCGGT	1 cut(s)	193
AspA2I	CCTAGG	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	33, 114
AsuC2I	CCSGG	2 cut(s)	31, 480
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	33, 114
AvrII	CCTAGG	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	474
BccI	CCATC	1 cut(s)	269
BcnI	CCSGG	2 cut(s)	31, 480
BcoDI	GTCTC	2 cut(s)	99, 148
BfaI	CTAG	3 cut(s)	90, 369, 470
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	2 cut(s)	68, 161
BlnI	CCTAGG	1 cut(s)	469
BlsI	GCNGC	2 cut(s)	69, 162
Bme1390I	CCNGG	2 cut(s)	31, 480
Bme18I	GGWCC	2 cut(s)	33, 114
BmgT120I	GGNCC	2 cut(s)	33, 114
BmiI	GGNNCC	3 cut(s)	34, 437, 476
BmrFI	CCNGG	2 cut(s)	31, 480
BpuMI	CCSGG	2 cut(s)	31, 480
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	117, 469, 478
BsaWI	WCCGGW	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	116, 272
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	117, 469, 478
BseJI	GATNNNNATC	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	116, 272
BseSI	GKGCMC	1 cut(s)	477
BseX3I	CGGCCG	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	35
Bsh1285I	CGRYCG	2 cut(s)	30, 194
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	474
BshTI	ACCGGT	1 cut(s)	193
BsiEI	CGRYCG	2 cut(s)	30, 194
BsiSI	CCGG	7 cut(s)	11, 26, 30, 151, 171, 194, 480
BsmAI	GTCTC	2 cut(s)	99, 148
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	6 cut(s)	55, 65, 68, 161, 168, 466
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	34, 437, 476
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	116, 272
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	117, 469, 478
BssMI	GATC	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	117, 469
Bst4CI	ACNGT	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	77, 218
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	2 cut(s)	99, 148
BstMBI	GATC	1 cut(s)	396
BstMCI	CGRYCG	2 cut(s)	30, 194
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 221, 257
BstSCI	CCNGG	2 cut(s)	29, 478
BstSLI	GKGCMC	1 cut(s)	477
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	74, 283
BveI	ACCTGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	33, 114
CseI	GACGC	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	193
CviAII	CATG	3 cut(s)	461, 485, 490
CviJI	RGCY	5 cut(s)	29, 160, 224, 251, 454
CviKI_1	RGCY	5 cut(s)	29, 160, 224, 251, 454
DdeI	CTNAG	2 cut(s)	77, 218
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
DraIII	CACNNNGTG	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	117, 469
Eco47I	GGWCC	2 cut(s)	33, 114
Eco52I	CGGCCG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	117, 469
ErhI	CCWWGG	2 cut(s)	117, 469
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	3 cut(s)	464, 488, 493
FatI	CATG	3 cut(s)	460, 484, 489
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	68, 161
Fsp4HI	GCNGC	2 cut(s)	68, 161
FspBI	CTAG	3 cut(s)	90, 369, 470
GluI	GCNGC	2 cut(s)	68, 161
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	7 cut(s)	11, 26, 30, 151, 171, 194, 480
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	464, 488, 493
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	5 cut(s)	81, 361, 391, 404, 443
HpaII	CCGG	7 cut(s)	11, 26, 30, 151, 171, 194, 480
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	191, 374
Hpy188I	TCNGA	3 cut(s)	37, 202, 396
Hpy188III	TCNNGA	2 cut(s)	135, 485
Hpy8I	GTNNAC	2 cut(s)	191, 374
HpyAV	CCTTC	2 cut(s)	68, 327
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	52, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 221, 257
HpyF3I	CTNAG	2 cut(s)	77, 218
Hsp92II	CATG	3 cut(s)	464, 488, 493
Kzo9I	GATC	1 cut(s)	396
MaeI	CTAG	3 cut(s)	90, 369, 470
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	477
MlyI	GAGTC	2 cut(s)	370, 437
MnlI	CCTC	2 cut(s)	115, 392
MseI	TTAA	1 cut(s)	239
MspI	CCGG	7 cut(s)	11, 26, 30, 151, 171, 194, 480
MspR9I	CCNGG	2 cut(s)	31, 480
MwoI	GCNNNNNNNGC	3 cut(s)	212, 221, 257
NciI	CCSGG	2 cut(s)	31, 480
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	3 cut(s)	464, 488, 493
NlaIV	GGNNCC	3 cut(s)	34, 437, 476
PagI	TCATGA	1 cut(s)	484
PfeI	GAWTC	3 cut(s)	81, 391, 404
PinAI	ACCGGT	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	69, 162
PleI	GAGTC	2 cut(s)	369, 437
PpsI	GAGTC	2 cut(s)	369, 437
PspN4I	GGNNCC	3 cut(s)	34, 437, 476
PspPI	GGNCC	2 cut(s)	33, 114
SalI	GTCGAC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	68, 161
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	2 cut(s)	33, 114
SchI	GAGTC	2 cut(s)	370, 437
ScrFI	CCNGG	2 cut(s)	31, 480
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	7 cut(s)	51, 132, 226, 236, 253, 309, 384
SinI	GGWCC	2 cut(s)	33, 114
SsiI	CCGC	6 cut(s)	55, 65, 68, 161, 168, 466
SspMI	CTAG	3 cut(s)	90, 369, 470
StyD4I	CCNGG	2 cut(s)	29, 478
StyI	CCWWGG	2 cut(s)	117, 469
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	190, 229
TauI	GCSGC	2 cut(s)	70, 163
TfiI	GAWTC	3 cut(s)	81, 391, 404
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	81, 290
TspDTI	ATGAA	3 cut(s)	17, 339, 441
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	2 cut(s)	81, 290
VpaK11BI	GGWCC	2 cut(s)	33, 114
XmaJI	CCTAGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	3 cut(s)	90, 369, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.