Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003669.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

66774 .. 68518

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003669.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgataacatttgtgaagaactataattatagacctgtgggagccaagtcaattccggagtctaattataatcgcgcccctaagagaggtcgcaacgagcgaaaccctaaggataaggataattcttgccctaaagaggaaggaaaccgccaagataggcgtgcagggaaccgtggtggtaaacgtgtgaagagagagagagagagaggccaagcctccggttatggtggtgacgccaccaaggaaagaaaccgtccccaaaacgcttctcaagatgcacggaaccgtggtggaatggattctggagaactacaatgtcttgcggatagtgcgactacgcacaccattctacgctataggcaattattcttagagatgttgcctacacattcctctgtgactacgatggctgggccatcaggtttagttcaaggacatggaatgacccaattcctattgccaaatggcaccttgattaaattcgcagaagctctctacgctcctaaggcaaatcaaaccttattgagctttaaagatataagagccaacagattccatacggaaacgcatactgagaaccgaaaagagttcatttgcattacctctaatgattgcagacggaagcgtatcttagagaagcttgtgtgtcagtttagtggactttatgtcactacaattcgaccaattgaatccaataatgtcataagagaagatctcttggattctgacacatactggctttggaatgaccgattaggacatcctgcagccaccgcagcatctggcgctgcagctgtcttgggacgccatagggctacccaagtcccttatgacaatgccaaaaacggtgctaccaatggcaatgatgccatggatgtctctccccattgtaaagacgccatggatgccactttccatggttccaacgccatgatgggtgatgtagtcacacattttgcttctaatagcgctacagacactcaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

329

Amino Acids

36.53

Weight (kDa)

9.43

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	467
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	148, 323, 774
AcsI	RAATTY	1 cut(s)	479
AcyI	GRCGYC	3 cut(s)	234, 805, 897
AfeI	AGCGCT	1 cut(s)	970
AfiI	CCNNNNNNNGG	2 cut(s)	86, 136
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	431, 689
AhdI	GACNNNNNGTC	1 cut(s)	665
AluBI	AGCT	4 cut(s)	491, 528, 640, 794
AluI	AGCT	4 cut(s)	491, 528, 640, 794
Alw26I	GTCTC	1 cut(s)	883
AlwNI	CAGNNNCTG	1 cut(s)	782
Aor13HI	TCCGGA	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	970
AoxI	GGCC	3 cut(s)	208, 413, 984
ApeKI	GCWGC	4 cut(s)	767, 776, 788, 791
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	3 cut(s)	77, 788, 971
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	242, 950
AxyI	CCTNAGG	2 cut(s)	108, 504
BanI	GGYRCC	1 cut(s)	467
BbvI	GCAGC	4 cut(s)	775, 779, 788, 803
BccI	CCATC	3 cut(s)	400, 424, 928
BcoDI	GTCTC	1 cut(s)	883
BfmI	CTRYAG	4 cut(s)	355, 765, 789, 972
BfoI	RGCGCY	2 cut(s)	789, 972
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	4 cut(s)	768, 777, 789, 792
BlsI	GCNGC	4 cut(s)	769, 778, 790, 793
BmeRI	GACNNNNNGTC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	5 cut(s)	43, 170, 284, 469, 922
BmsI	GCATC	4 cut(s)	265, 788, 856, 895
BplI	GAGNNNNNCTC	2 cut(s)	699, 731
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	255
BsaHI	GRCGYC	3 cut(s)	234, 805, 897
BsaJI	CCNNGG	6 cut(s)	172, 240, 286, 870, 900, 916
BsaWI	WCCGGW	2 cut(s)	55, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 136
Bse1I	ACTGG	1 cut(s)	740
Bse21I	CCTNAGG	2 cut(s)	108, 504
Bse3DI	GCAATG	1 cut(s)	868
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	6 cut(s)	172, 240, 286, 870, 900, 916
BseGI	GGATG	3 cut(s)	760, 880, 910
BseLI	CCNNNNNNNGG	2 cut(s)	86, 136
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	740
BseXI	GCAGC	4 cut(s)	775, 779, 788, 803
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	210, 415, 986
BshNI	GGYRCC	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	56, 219
BslFI	GGGAC	3 cut(s)	240, 809, 816
BslI	CCNNNNNNNGG	2 cut(s)	86, 136
BsmAI	GTCTC	1 cut(s)	883
BsmFI	GGGAC	3 cut(s)	240, 809, 816
BsnI	GGCC	3 cut(s)	210, 415, 986
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	712
Bsp19I	CCATGG	3 cut(s)	870, 900, 916
BspACI	CCGC	3 cut(s)	148, 323, 774
BspANI	GGCC	3 cut(s)	210, 415, 986
BspCNI	CTCAG	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	5 cut(s)	43, 170, 284, 469, 922
BspMAI	CTGCAG	2 cut(s)	769, 793
BspT107I	GGYRCC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	6 cut(s)	172, 240, 286, 870, 900, 916
BssMI	GATC	1 cut(s)	712
BssNI	GRCGYC	3 cut(s)	234, 805, 897
BssT1I	CCWWGG	4 cut(s)	240, 870, 900, 916
Bst4CI	ACNGT	4 cut(s)	173, 254, 287, 848
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	3 cut(s)	234, 805, 897
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	7 cut(s)	81, 108, 370, 504, 573, 631, 981
BstDSI	CCRYGG	5 cut(s)	172, 286, 870, 900, 916
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	760, 880, 910
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	2 cut(s)	789, 972
BstHHI	GCGC	3 cut(s)	77, 788, 971
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 497, 506, 773, 776, 785, 905
BstSFI	CTRYAG	4 cut(s)	355, 765, 789, 972
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	4 cut(s)	775, 779, 788, 803
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	2 cut(s)	108, 504
BsuRI	GGCC	3 cut(s)	210, 415, 986
BtgI	CCRYGG	5 cut(s)	172, 286, 870, 900, 916
BtsCI	GGATG	3 cut(s)	760, 880, 910
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	3 cut(s)	77, 788, 971
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	3 cut(s)	242, 813, 905
CviAII	CATG	5 cut(s)	437, 871, 901, 917, 931
DdeI	CTNAG	7 cut(s)	81, 108, 370, 504, 573, 631, 981
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
DraI	TTTAAA	1 cut(s)	532
DriI	GACNNNNNGTC	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	185
Eam1105I	GACNNNNNGTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	4 cut(s)	240, 870, 900, 916
Eco147I	AGGCCT	1 cut(s)	986
Eco47III	AGCGCT	1 cut(s)	970
Eco81I	CCTNAGG	2 cut(s)	108, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoT14I	CCWWGG	4 cut(s)	240, 870, 900, 916
ErhI	CCWWGG	4 cut(s)	240, 870, 900, 916
FaeI	CATG	5 cut(s)	440, 874, 904, 920, 934
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	3 cut(s)	240, 809, 816
FatI	CATG	5 cut(s)	436, 870, 900, 916, 930
Fnu4HI	GCNGC	4 cut(s)	768, 777, 789, 792
FokI	GGATG	3 cut(s)	747, 887, 917
Fsp4HI	GCNGC	4 cut(s)	768, 777, 789, 792
GlaI	GCGC	3 cut(s)	76, 787, 970
GluI	GCNGC	4 cut(s)	768, 777, 789, 792
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	2 cut(s)	789, 972
HaeIII	GGCC	3 cut(s)	210, 415, 986
HapII	CCGG	2 cut(s)	56, 219
HgaI	GACGC	3 cut(s)	242, 813, 905
HhaI	GCGC	3 cut(s)	77, 788, 971
Hin1I	GRCGYC	3 cut(s)	234, 805, 897
Hin1II	CATG	5 cut(s)	440, 874, 904, 920, 934
Hin6I	GCGC	3 cut(s)	75, 786, 969
HinP1I	GCGC	3 cut(s)	75, 786, 969
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	5 cut(s)	59, 299, 552, 689, 722
HpaII	CCGG	2 cut(s)	56, 219
HphI	GGTGA	2 cut(s)	242, 950
Hpy166II	GTNNAC	2 cut(s)	182, 659
Hpy188I	TCNGA	1 cut(s)	727
Hpy188III	TCNNGA	3 cut(s)	56, 272, 303
Hpy8I	GTNNAC	2 cut(s)	182, 659
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	4 cut(s)	173, 254, 287, 848
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	6 cut(s)	164, 278, 597, 615, 767, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 497, 506, 773, 776, 785, 905
HpyF3I	CTNAG	7 cut(s)	81, 108, 370, 504, 573, 631, 981
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	3 cut(s)	234, 805, 897
Hsp92II	CATG	5 cut(s)	440, 874, 904, 920, 934
HspAI	GCGC	3 cut(s)	75, 786, 969
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	2 cut(s)	41, 505
Lsp1109I	GCAGC	4 cut(s)	775, 779, 788, 803
LweI	GCATC	4 cut(s)	265, 788, 856, 895
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	4 cut(s)	230, 397, 667, 946
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	3 cut(s)	28, 202, 722
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	9 cut(s)	25, 51, 64, 121, 362, 449, 479, 675, 684
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	948
MnlI	CCTC	6 cut(s)	80, 130, 200, 226, 403, 613
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	2 cut(s)	477, 531
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	2 cut(s)	56, 219
MunI	CAATTG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	329, 497, 506, 773, 776, 785, 905
NcoI	CCATGG	3 cut(s)	870, 900, 916
NdeII	GATC	1 cut(s)	712
NlaIII	CATG	5 cut(s)	440, 874, 904, 920, 934
NlaIV	GGNNCC	5 cut(s)	43, 170, 284, 469, 922
NmuCI	GTSAC	4 cut(s)	230, 397, 667, 946
PceI	AGGCCT	1 cut(s)	986
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	4 cut(s)	299, 552, 689, 722
PkrI	GCNGC	4 cut(s)	769, 778, 790, 793
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	5 cut(s)	43, 170, 284, 469, 922
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	2 cut(s)	769, 793
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	477, 531
SatI	GCNGC	4 cut(s)	768, 777, 789, 792
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	68
SfaNI	GCATC	4 cut(s)	265, 788, 856, 895
SfcI	CTRYAG	4 cut(s)	355, 765, 789, 972
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	9 cut(s)	25, 51, 64, 121, 362, 449, 479, 675, 684
SseBI	AGGCCT	1 cut(s)	986
SsiI	CCGC	3 cut(s)	148, 323, 774
StuI	AGGCCT	1 cut(s)	986
StyI	CCWWGG	4 cut(s)	240, 870, 900, 916
TaaI	ACNGT	4 cut(s)	173, 254, 287, 848
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	679
TaqII	GACCGA	1 cut(s)	765
TasI	AATT	9 cut(s)	25, 51, 64, 121, 362, 449, 479, 675, 684
TfiI	GAWTC	4 cut(s)	299, 552, 689, 722
Tru1I	TTAA	2 cut(s)	477, 531
Tru9I	TTAA	2 cut(s)	477, 531
TseFI	GTSAC	4 cut(s)	230, 397, 667, 946
TseI	GCWGC	4 cut(s)	767, 776, 788, 791
Tsp45I	GTSAC	4 cut(s)	230, 397, 667, 946
TspDTI	ATGAA	1 cut(s)	580
TspGWI	ACGGA	3 cut(s)	295, 575, 634
XagI	CCTNNNNNAGG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XmnI	GAANNNNTTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.