Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

5754675 .. 5755457

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1033000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGAAATCTGGGTACGGCAGAGATGGCATTTTCCGGTCACTCCGGCCGCCGCTTGTCCTACCCAGAGACCCAAATCTCTCAATGGTCTCCTTCCTCTTCAGAAACTCCTCCTCTTACTCCCACAAGCCCGCCCTCATCGAAGGCGAGTCTTCCGAAACCCTTTCCTTCTCACAGTTCAAGTCCAAAGTTATCCAGGTATCCCATGGTTTAATCCATCTGGGCATCAAGAAAAACGACGTGGTCCTTATTCTCGCCCCCAACTCAATCCAATTCCCCATTTGTTTCCTCGGGATTATTGCGTCCGGCGGTATTGCCACCACCTCCAATCCCCTCTACACTGTTTCAGAGCTGTCCAAGCAAGTCCGGGACTCTAATCCCAAGCTGGTTATAACACTCCGGGAGCTCTGGGATAAAGTCAAGGGCTTTAATCTCCCAACAGTGTTCTTAGGGTCAAAGGGCTTATCGGGGAAATCCCACGTCGGATCAACCTCAAAGATTCTAACTTTCCATGACTTGGTCGAGTCTGCTGGGTCTGTGTCCGATTTTCCATCGGTTAACATTAAGCAGACCGACACAGCTGCCCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

198

Amino Acids

21.37

Weight (kDa)

9.52

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	35 - 138	2.4e-22	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	517
AciI	CCGC	4 cut(s)	50, 53, 132, 309
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	85
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	181
AjiI	CACGTC	2 cut(s)	241, 481
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	352, 385, 406, 581
AluI	AGCT	4 cut(s)	352, 385, 406, 581
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	63, 94
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	2 cut(s)	368, 401
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	3 cut(s)	20, 225, 559
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	368, 401
BcoDI	GTCTC	2 cut(s)	63, 94
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	50, 53, 582
BlsI	GCNGC	3 cut(s)	51, 54, 583
Bme1390I	CCNGG	3 cut(s)	197, 368, 401
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	290
BmgBI	CACGTC	2 cut(s)	241, 481
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	197, 368, 401
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	368, 401
BsaI	GGTCTC	2 cut(s)	63, 94
BsaJI	CCNNGG	2 cut(s)	205, 289
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	205, 289
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	100, 103
BseX3I	CGGCCG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	568
BseYI	CCCAGC	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	37, 46, 306, 367, 400
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	63, 94
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	49
Bso31I	GGTCTC	2 cut(s)	63, 94
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	4 cut(s)	50, 53, 132, 309
BspANI	GGCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	493
BspTNI	GGTCTC	2 cut(s)	63, 94
BssECI	CCNNGG	2 cut(s)	205, 289
BssMI	GATC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	177, 343, 442
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	448
BstDSI	CCRYGG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	488
BstMAI	GTCTC	2 cut(s)	63, 94
BstMBI	GATC	1 cut(s)	485
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 358
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	195, 366, 399
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	144
BstZI	CGGCCG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	205
BtrI	CACGTC	2 cut(s)	241, 481
BtsIMutI	CAGTG	2 cut(s)	339, 447
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	206, 512
CviJI	RGCY	8 cut(s)	49, 130, 352, 385, 406, 426, 462, 581
CviKI_1	RGCY	8 cut(s)	49, 130, 352, 385, 406, 426, 462, 581
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	1 cut(s)	487
DpnII	GATC	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	47
EagI	CGGCCG	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	406
EclXI	CGGCCG	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	408
Eco31I	GGTCTC	2 cut(s)	63, 94
Eco47I	GGWCC	1 cut(s)	244
Eco52I	CGGCCG	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	209, 515
FaiI	YATR	3 cut(s)	207, 392, 513
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	205, 511
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	50, 53, 582
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	50, 53, 582
GluI	GCNGC	3 cut(s)	50, 53, 582
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	5 cut(s)	37, 46, 306, 367, 400
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	209, 515
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	4 cut(s)	149, 371, 499, 524
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	5 cut(s)	37, 46, 306, 367, 400
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	5 cut(s)	104, 157, 349, 485, 544
Hpy188III	TCNNGA	2 cut(s)	229, 292
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	2 cut(s)	242, 485
HpyAV	CCTTC	3 cut(s)	103, 137, 178
HpyCH4III	ACNGT	3 cut(s)	177, 343, 442
HpyCH4IV	ACGT	2 cut(s)	240, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 358
HpyF3I	CTNAG	1 cut(s)	448
HpySE526I	ACGT	2 cut(s)	240, 480
Hsp92II	CATG	2 cut(s)	209, 515
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	485
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	2 cut(s)	240, 480
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	487
MboI	GATC	1 cut(s)	485
MboII	GAAGA	2 cut(s)	91, 144
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	1 cut(s)	272
MlyI	GAGTC	3 cut(s)	158, 365, 533
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	8 cut(s)	107, 121, 124, 146, 299, 334, 344, 502
MseI	TTAA	4 cut(s)	212, 429, 558, 564
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	5 cut(s)	37, 46, 306, 367, 400
MspR9I	CCNGG	3 cut(s)	197, 368, 401
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	27, 358
NciI	CCSGG	2 cut(s)	368, 401
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	485
NlaIII	CATG	2 cut(s)	209, 515
NmuCI	GTSAC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	499
PflFI	GACNNNGTC	2 cut(s)	242, 518
PflMI	CCANNNNNTGG	1 cut(s)	517
PfoI	TCCNGGA	2 cut(s)	366, 399
PkrI	GCNGC	3 cut(s)	51, 54, 583
PleI	GAGTC	3 cut(s)	157, 365, 532
PpsI	GAGTC	3 cut(s)	157, 365, 532
PsiI	TTATAA	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	244
PsyI	GACNNNGTC	2 cut(s)	242, 518
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	4 cut(s)	212, 429, 558, 564
SatI	GCNGC	3 cut(s)	50, 53, 582
Sau3AI	GATC	1 cut(s)	485
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	3 cut(s)	158, 365, 533
ScrFI	CCNGG	3 cut(s)	197, 368, 401
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	9 cut(s)	201, 243, 326, 354, 387, 408, 483, 494, 583
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	4 cut(s)	50, 53, 132, 309
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	3 cut(s)	195, 366, 399
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	3 cut(s)	177, 343, 442
TaiI	ACGT	2 cut(s)	243, 483
TaqI	TCGA	2 cut(s)	141, 522
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	1 cut(s)	272
TauI	GCSGC	2 cut(s)	52, 55
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	4 cut(s)	212, 429, 558, 564
Tru9I	TTAA	4 cut(s)	212, 429, 558, 564
TscAI	CASTG	2 cut(s)	346, 447
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	39
TspRI	CASTG	2 cut(s)	346, 447
Tth111I	GACNNNGTC	2 cut(s)	242, 518
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.