Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

21077539 .. 21078906

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0121100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCCTCAGCCACGCAAGCAGCGACGATCTACGGCGGTCTCTTCACCGCCGCCGCTCCTCTCCAAACAAAGCGTCGGTCTTTCACCTTCAGAATCACAGCCTCATCAAACTCCTCCAACCCACCCATCGTCGGCCGTAAGCTCCGCGCCGCCGTCATCGGCGCCGGTCCCGCCGGGTCCTCCGCCGCCGAGGCCTTGGCCGCCGGCGGAGCCGAGTGCTTCCTCTTCGAGCGAGCCCCCTCGGAAGCCAAGCCCTGCGGCGGAGCCATCCCTCTCTGCATGCTCGACGAGTTCGACATCCCGGCACGCCTCATCGACCGCCACGTCACCCGCATGAGGATCTTCTCCCCCTCCAACCTCGCCGTCGACTTCGGCAAGACCCTCCGCCCCCACGAGTTCATCGCCATGCTCCGCCGCGAGGTCCTCGACTCCTTCCTCCGCGACCGCGCCCAGTCCCGCGGCGCCTCCCTCATCTCCGGCCTCGTCACCCGCCTCGAGATCCCCGCCTCCTCCTCCCCCCACGCGCCCTACGTCGTCCACTACACCAAGGACCACGCGCGCCACGCTCTCACAGTCGACGTCGTCGTCGGCGCGGACGGCGCCAACAGCCGCGTCGCCAAGTCGATCAGAGCCGGAAGCTACGCCTGCGCCATCGCTTTCCAGGAGAGGATCAAACTCCCAGACGACAAAATGGCCTACTACGAAGACCTCGCCGAAATGTACGTCGGAAACGACGTGTCGCCCGACTTTTACGCCTGGGTCTTCCCCAAATGCGACCACGTGGCAGTGGGCACCGGCACTGTGTGCTCCAAGCAGGACATCAAGGTCTTCCAAAGAGCCATCAGAGCCAGAGCCAATGCCAAGATCAGCGGTGGCAAGGTCATCAAGGTGGAGGCCCACCCGATACCCGAGCACCCCCGCCCCACGCGCGTGAGGGGGCGCGTGGCGCTCATTGGAGACGCTGCCGGGTACGTGACCAAATGTTCCGGCGAGGGGATTTACTTTGCGGCTAAATCGGGGAGAATGTGCGGCGAGGCGATAATAAAGGCGTCCGAGGGAGGGGAGAGGATGATAAACGAGGAGGATTTGAAGAGGGAGTATTTGAAAGAGTGGGATGCTAAGTACATTACGACGTTTAGGTTCTTGGACTTGTTGCAGAAGGTGTTTTATGGTAGTGATGCGGCTAGAGAAGCTTTGGTGGAGCTGTGTGGGGATGAGTATGTGCAGCGCATGACGTTCGAGAGTTACTTGTACAAGAAGTTAGCTGATGGGAATAGGTGGGATGATGCTAAGATGGTTTTGAATACCGTTGGGAGTTTGATGAGGTGTAATGTTTTGGGGAGGAAAATGGAGGCTTTGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

455

Amino Acids

49.82

Weight (kDa)

9.14

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	49 - 338	1.9e-09	FAD binding domain
GGR_cat	PF22578	233 - 275	1.4e-06	Geranylgeranyl reductase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	323, 584, 824
AatII	GACGTC	1 cut(s)	582
AccB1I	GGYRCC	4 cut(s)	161, 461, 599, 791
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	2 cut(s)	366, 576
AclWI	GGATC	3 cut(s)	347, 493, 677
AcoI	YGGCCR	2 cut(s)	133, 198
AcuI	CTGAAG	1 cut(s)	73
AcvI	CACGTG	1 cut(s)	781
AcyI	GRCGYC	5 cut(s)	162, 462, 579, 600, 1049
AdeI	CACNNNGTG	1 cut(s)	804
AfaI	GTAC	4 cut(s)	722, 971, 1124, 1253
AfiI	CCNNNNNNNGG	6 cut(s)	131, 260, 336, 418, 993, 1059
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	1090, 1105, 1303, 1360
AjiI	CACGTC	2 cut(s)	325, 736
AjnI	CCWGG	2 cut(s)	660, 755
AleI	CACNNNNGTG	1 cut(s)	929
AluBI	AGCT	5 cut(s)	142, 639, 1193, 1204, 1265
AluI	AGCT	5 cut(s)	142, 639, 1193, 1204, 1265
Alw21I	GWGCWC	2 cut(s)	809, 915
Alw26I	GTCTC	2 cut(s)	44, 951
AlwI	GGATC	3 cut(s)	347, 493, 677
Ama87I	CYCGRG	2 cut(s)	494, 908
AoxI	GGCC	7 cut(s)	3, 133, 192, 198, 478, 693, 894
ApeKI	GCWGC	3 cut(s)	20, 962, 1225
ArsI	GACNNNNNNTTYG	6 cut(s)	58, 62, 90, 94, 708, 740
AspS9I	GGNCC	5 cut(s)	167, 177, 421, 550, 895
AsuC2I	CCSGG	3 cut(s)	175, 302, 967
AsuHPI	GGTGA	4 cut(s)	37, 76, 319, 478
AvaI	CYCGRG	2 cut(s)	494, 908
AvaII	GGWCC	4 cut(s)	167, 177, 421, 550
BaeGI	GKGCMC	1 cut(s)	794
BanI	GGYRCC	4 cut(s)	161, 461, 599, 791
BanII	GRGCYC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	781
BbsI	GAAGAC	3 cut(s)	711, 754, 820
Bbv12I	GWGCWC	2 cut(s)	809, 915
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	3 cut(s)	32, 949, 1237
BccI	CCATC	6 cut(s)	134, 275, 659, 848, 1262, 1288
BceAI	ACGGC	5 cut(s)	49, 120, 137, 347, 613
BcgI	CGANNNNNNTGC	2 cut(s)	1219, 1253
BciT130I	CCWGG	2 cut(s)	662, 757
BcnI	CCSGG	3 cut(s)	175, 302, 967
BcoDI	GTCTC	2 cut(s)	44, 951
BfaI	CTAG	1 cut(s)	1185
BfoI	RGCGCY	4 cut(s)	165, 465, 603, 950
BglI	GCCNNNNNGGC	1 cut(s)	191
Bme1390I	CCNGG	5 cut(s)	175, 302, 662, 757, 967
Bme18I	GGWCC	4 cut(s)	167, 177, 421, 550
BmeT110I	CYCGRG	2 cut(s)	494, 908
BmgBI	CACGTC	2 cut(s)	325, 736
BmgT120I	GGNCC	5 cut(s)	167, 177, 421, 550, 895
BmiI	GGNNCC	8 cut(s)	163, 169, 178, 211, 265, 463, 601, 793
BmrFI	CCNGG	5 cut(s)	175, 302, 662, 757, 967
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	3 cut(s)	1105, 1168, 1276
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	3 cut(s)	711, 754, 820
Bpu10I	CCTNAGC	1 cut(s)	7
BpuMI	CCSGG	3 cut(s)	175, 302, 967
BsaAI	YACGTR	2 cut(s)	781, 973
BsaHI	GRCGYC	5 cut(s)	162, 462, 579, 600, 1049
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	7 cut(s)	189, 195, 240, 457, 546, 756, 1053
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 260, 336, 418, 993, 1059
Bse118I	RCCGGY	3 cut(s)	164, 203, 794
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	662, 757
BseDI	CCNNGG	7 cut(s)	189, 195, 240, 457, 546, 756, 1053
BseGI	GGATG	6 cut(s)	267, 297, 1074, 1120, 1219, 1288
BseLI	CCNNNNNNNGG	6 cut(s)	131, 260, 336, 418, 993, 1059
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	451
BsePI	GCGCGC	1 cut(s)	557
BseRI	GAGGAG	5 cut(s)	48, 103, 499, 502, 1094
BseSI	GKGCMC	1 cut(s)	794
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	32, 949, 1237
BsgI	GTGCAG	1 cut(s)	1244
Bsh1285I	CGRYCG	3 cut(s)	136, 319, 445
BshFI	GGCC	7 cut(s)	5, 135, 194, 200, 480, 695, 896
BshNI	GGYRCC	4 cut(s)	161, 461, 599, 791
BsiEI	CGRYCG	3 cut(s)	136, 319, 445
BsiHKAI	GWGCWC	2 cut(s)	809, 915
BsiHKCI	CYCGRG	2 cut(s)	494, 908
BsiSI	CCGG	9 cut(s)	165, 174, 204, 302, 477, 633, 795, 966, 987
BslFI	GGGAC	2 cut(s)	153, 439
BslI	CCNNNNNNNGG	6 cut(s)	131, 260, 336, 418, 993, 1059
BsmAI	GTCTC	2 cut(s)	44, 951
BsmBI	CGTCTC	1 cut(s)	951
BsmFI	GGGAC	2 cut(s)	153, 439
BsnI	GGCC	7 cut(s)	5, 135, 194, 200, 480, 695, 896
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	494, 908
Bsp1286I	GDGCHC	4 cut(s)	238, 794, 809, 915
Bsp1407I	TGTACA	1 cut(s)	1251
Bsp143I	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
BspANI	GGCC	7 cut(s)	5, 135, 194, 200, 480, 695, 896
BspCNI	CTCAG	1 cut(s)	20
BspLI	GGNNCC	8 cut(s)	163, 169, 178, 211, 265, 463, 601, 793
BspPI	GGATC	3 cut(s)	347, 493, 677
BspT107I	GGYRCC	4 cut(s)	161, 461, 599, 791
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	3 cut(s)	164, 203, 794
BsrGI	TGTACA	1 cut(s)	1251
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	3 cut(s)	164, 203, 794
BssECI	CCNNGG	7 cut(s)	189, 195, 240, 457, 546, 756, 1053
BssHII	GCGCGC	1 cut(s)	557
BssMI	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
BssNI	GRCGYC	5 cut(s)	162, 462, 579, 600, 1049
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	195, 546
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	662, 757
Bst4CI	ACNGT	3 cut(s)	574, 802, 1309
Bst6I	CTCTTC	3 cut(s)	47, 230, 1085
BstACI	GRCGYC	5 cut(s)	162, 462, 579, 600, 1049
BstAPI	GCANNNNNTGC	1 cut(s)	804
BstAUI	TGTACA	1 cut(s)	1251
BstBAI	YACGTR	2 cut(s)	781, 973
BstC8I	GCNNGC	7 cut(s)	18, 205, 234, 281, 307, 559, 646
BstDEI	CTNAG	3 cut(s)	7, 1119, 1290
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	6 cut(s)	267, 297, 1074, 1120, 1219, 1288
BstH2I	RGCGCY	4 cut(s)	165, 465, 603, 950
BstKTI	GATC	6 cut(s)	30, 342, 501, 627, 672, 867
BstMAI	GTCTC	2 cut(s)	44, 951
BstMBI	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
BstMCI	CGRYCG	3 cut(s)	136, 319, 445
BstNI	CCWGG	2 cut(s)	662, 757
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	5 cut(s)	173, 300, 660, 755, 965
BstSLI	GKGCMC	1 cut(s)	794
BstV1I	GCAGC	3 cut(s)	32, 949, 1237
BstV2I	GAAGAC	3 cut(s)	711, 754, 820
BstX2I	RGATCY	2 cut(s)	339, 498
BstYI	RGATCY	2 cut(s)	339, 498
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	7 cut(s)	5, 135, 194, 200, 480, 695, 896
BtgI	CCRYGG	1 cut(s)	457
BtgZI	GCGATG	2 cut(s)	385, 637
BtrI	CACGTC	2 cut(s)	325, 736
BtsCI	GGATG	6 cut(s)	267, 297, 1074, 1120, 1219, 1288
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	792, 798
Cac8I	GCNNGC	7 cut(s)	18, 205, 234, 281, 307, 559, 646
Cfr10I	RCCGGY	3 cut(s)	164, 203, 794
Cfr13I	GGNCC	5 cut(s)	167, 177, 421, 550, 895
Cfr42I	CCGCGG	1 cut(s)	460
CseI	GACGC	4 cut(s)	62, 601, 968, 1038
Csp6I	GTAC	4 cut(s)	721, 970, 1123, 1252
CviAII	CATG	4 cut(s)	280, 334, 406, 1231
CviQI	GTAC	4 cut(s)	721, 970, 1123, 1252
DdeI	CTNAG	3 cut(s)	7, 1119, 1290
DinI	GGCGCC	3 cut(s)	163, 463, 601
DpnI	GATC	6 cut(s)	29, 341, 500, 626, 671, 866
DpnII	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
DraIII	CACNNNGTG	1 cut(s)	804
DrdI	GACNNNNNNGTC	3 cut(s)	323, 584, 824
DseDI	GACNNNNNNGTC	3 cut(s)	323, 584, 824
EaeI	YGGCCR	2 cut(s)	133, 198
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	47, 230, 1085
EarI	CTCTTC	3 cut(s)	47, 230, 1085
EciI	GGCGGA	5 cut(s)	172, 222, 276, 374, 401
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	195, 546
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	4 cut(s)	167, 177, 421, 550
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	781
Eco88I	CYCGRG	2 cut(s)	494, 908
EcoO109I	RGGNCCY	2 cut(s)	177, 421
EcoRII	CCWGG	2 cut(s)	660, 755
EcoT14I	CCWWGG	2 cut(s)	195, 546
EcoT38I	GRGCYC	1 cut(s)	238
EgeI	GGCGCC	3 cut(s)	163, 463, 601
EheI	GGCGCC	3 cut(s)	163, 463, 601
ErhI	CCWWGG	2 cut(s)	195, 546
Esp3I	CGTCTC	1 cut(s)	951
FaeI	CATG	4 cut(s)	283, 337, 409, 1234
FaiI	YATR	6 cut(s)	281, 335, 407, 1170, 1221, 1232
FaqI	GGGAC	2 cut(s)	153, 439
FatI	CATG	4 cut(s)	279, 333, 405, 1230
FauI	CCCGC	6 cut(s)	178, 338, 464, 497, 511, 926
FblI	GTMKAC	2 cut(s)	366, 576
FokI	GGATG	6 cut(s)	254, 284, 1081, 1127, 1226, 1295
FriOI	GRGCYC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	1185
HaeII	RGCGCY	4 cut(s)	165, 465, 603, 950
HaeIII	GGCC	7 cut(s)	5, 135, 194, 200, 480, 695, 896
HapII	CCGG	9 cut(s)	165, 174, 204, 302, 477, 633, 795, 966, 987
HgaI	GACGC	4 cut(s)	62, 601, 968, 1038
Hin1I	GRCGYC	5 cut(s)	162, 462, 579, 600, 1049
Hin1II	CATG	4 cut(s)	283, 337, 409, 1234
HincII	GTYRAC	2 cut(s)	367, 577
HindII	GTYRAC	2 cut(s)	367, 577
HindIII	AAGCTT	1 cut(s)	1191
HinfI	GANTC	2 cut(s)	93, 428
HpaII	CCGG	9 cut(s)	165, 174, 204, 302, 477, 633, 795, 966, 987
HphI	GGTGA	4 cut(s)	37, 76, 319, 478
Hpy166II	GTNNAC	3 cut(s)	367, 538, 577
Hpy188I	TCNGA	6 cut(s)	92, 244, 629, 728, 845, 1054
Hpy188III	TCNNGA	2 cut(s)	496, 1240
Hpy8I	GTNNAC	3 cut(s)	367, 538, 577
HpyAV	CCTTC	3 cut(s)	97, 442, 1153
HpyCH4III	ACNGT	3 cut(s)	574, 802, 1309
HpyCH4IV	ACGT	9 cut(s)	324, 531, 579, 723, 735, 780, 972, 1133, 1235
HpyCH4V	TGCA	3 cut(s)	279, 1156, 1225
HpyF3I	CTNAG	3 cut(s)	7, 1119, 1290
HpySE526I	ACGT	9 cut(s)	324, 531, 579, 723, 735, 780, 972, 1133, 1235
Hsp92I	GRCGYC	5 cut(s)	162, 462, 579, 600, 1049
Hsp92II	CATG	4 cut(s)	283, 337, 409, 1234
KasI	GGCGCC	3 cut(s)	161, 461, 599
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	460
Kzo9I	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
LmnI	GCTCC	7 cut(s)	61, 147, 209, 263, 414, 812, 1201
Lsp1109I	GCAGC	3 cut(s)	32, 949, 1237
LweI	GCATC	3 cut(s)	1105, 1168, 1276
MaeI	CTAG	1 cut(s)	1185
MaeII	ACGT	9 cut(s)	324, 531, 579, 723, 735, 780, 972, 1133, 1235
MaeIII	GTNAC	4 cut(s)	325, 484, 973, 1244
MalI	GATC	6 cut(s)	29, 341, 500, 626, 671, 866
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
MboII	GAAGA	7 cut(s)	34, 217, 334, 716, 754, 820, 1102
MflI	RGATCY	2 cut(s)	339, 498
MhlI	GDGCHC	4 cut(s)	238, 794, 809, 915
Mly113I	GGCGCC	3 cut(s)	162, 462, 600
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	3 cut(s)	141, 378, 706
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	203
MslI	CAYNNNNRTG	4 cut(s)	332, 404, 887, 929
MspA1I	CMGCKG	2 cut(s)	459, 870
MspI	CCGG	9 cut(s)	165, 174, 204, 302, 477, 633, 795, 966, 987
MspR9I	CCNGG	5 cut(s)	175, 302, 662, 757, 967
MvaI	CCWGG	2 cut(s)	662, 757
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	3 cut(s)	162, 462, 600
NciI	CCSGG	3 cut(s)	175, 302, 967
NdeII	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	4 cut(s)	283, 337, 409, 1234
NlaIV	GGNNCC	8 cut(s)	163, 169, 178, 211, 265, 463, 601, 793
NmeAIII	GCCGAG	2 cut(s)	214, 238
NmuCI	GTSAC	3 cut(s)	325, 484, 973
NspI	RCATGY	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	929
PaeI	GCATGC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	494
PauI	GCGCGC	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	8 cut(s)	20, 291, 321, 528, 582, 729, 732, 741
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	660
PleI	GAGTC	1 cut(s)	422
PluTI	GGCGCC	3 cut(s)	165, 465, 603
PmaCI	CACGTG	1 cut(s)	781
PmlI	CACGTG	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	2 cut(s)	781, 973
PpuMI	RGGWCCY	2 cut(s)	177, 421
Psp5II	RGGWCCY	2 cut(s)	177, 421
Psp6I	CCWGG	2 cut(s)	660, 755
PspCI	CACGTG	1 cut(s)	781
PspGI	CCWGG	2 cut(s)	660, 755
PspN4I	GGNNCC	8 cut(s)	163, 169, 178, 211, 265, 463, 601, 793
PspPI	GGNCC	5 cut(s)	167, 177, 421, 550, 895
PspPPI	RGGWCCY	2 cut(s)	177, 421
PsuI	RGATCY	2 cut(s)	339, 498
PsyI	GACNNNGTC	1 cut(s)	581
PteI	GCGCGC	1 cut(s)	557
RsaI	GTAC	4 cut(s)	722, 971, 1124, 1253
RsaNI	GTAC	4 cut(s)	721, 970, 1123, 1252
RseI	CAYNNNNRTG	4 cut(s)	332, 404, 887, 929
SacII	CCGCGG	1 cut(s)	460
SalI	GTCGAC	2 cut(s)	365, 575
Sau3AI	GATC	6 cut(s)	27, 339, 498, 624, 669, 864
Sau96I	GGNCC	5 cut(s)	167, 177, 421, 550, 895
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	5 cut(s)	175, 302, 662, 757, 967
SduI	GDGCHC	4 cut(s)	238, 794, 809, 915
SfaNI	GCATC	3 cut(s)	1105, 1168, 1276
SfoI	GGCGCC	3 cut(s)	163, 463, 601
Sfr274I	CTCGAG	1 cut(s)	494
Sfr303I	CCGCGG	1 cut(s)	460
SgrAI	CRCCGGYG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	460
SinI	GGWCC	4 cut(s)	167, 177, 421, 550
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	4 cut(s)	332, 404, 887, 929
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	283
SseBI	AGGCCT	1 cut(s)	194
SspDI	GGCGCC	3 cut(s)	161, 461, 599
SspMI	CTAG	1 cut(s)	1185
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	5 cut(s)	173, 300, 660, 755, 965
StyI	CCWWGG	2 cut(s)	195, 546
TaaI	ACNGT	3 cut(s)	574, 802, 1309
TaiI	ACGT	9 cut(s)	327, 534, 582, 726, 738, 783, 975, 1136, 1238
TaqII	GACCGA	1 cut(s)	66
TatI	WGTACW	2 cut(s)	1122, 1251
TfiI	GAWTC	1 cut(s)	93
TscAI	CASTG	2 cut(s)	792, 805
TseFI	GTSAC	3 cut(s)	325, 484, 973
TseI	GCWGC	3 cut(s)	20, 962, 1225
Tsp45I	GTSAC	3 cut(s)	325, 484, 973
TspDTI	ATGAA	1 cut(s)	388
TspRI	CASTG	2 cut(s)	792, 805
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	4 cut(s)	167, 177, 421, 550
XceI	RCATGY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	494
XmiI	GTMKAC	2 cut(s)	366, 576
XspI	CTAG	1 cut(s)	1185
ZraI	GACGTC	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.