Prupe.1G562500_v2.0.a1

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
45953802 .. 45955165
1364 bp
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UTR
Exon/CDS
Intron
Prupe.1G562500.1

Sequence Viewer

Length: 333 bp
ATGGCGCCCAAATCCTTCAACCCCAAAACCCAAACCTACACCTCCCCCCGACCTCCCGTCCCCTTCCCCATAGATCCCAACCTCTCCCTCACCTCCTTCCTCTTCCAATCCTCCACCTCCTTCCCCAACAACCTTGCCCTCGCCGACGCCGACATCGCGAAAACCCTAACCTTCCTCCAGCTCAAATCTCTAGTCTTCAAGCTGGCTCACGCCTTGCTCAACCACAACATCAAGAAAGAGACGTCGTCCTCATCTTCGCCCAAAACTCCATCCACTTCCCGCTTCTTCTCAATCGTCGCAATCACTGCCATTGCCACCAACTGCAATCTTTAA

Protein Analysis

111

Amino Acids

11.96

Weight (kDa)

9.92

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 158
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 68
AcyI GRCGYC 3 cut(s) 5, 147, 242
AgsI TTSAA 2 cut(s) 19, 199
AhdI GACNNNNNGTC 1 cut(s) 56
AluBI AGCT 2 cut(s) 181, 202
AluI AGCT 2 cut(s) 181, 202
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 161
BsaHI GRCGYC 3 cut(s) 5, 147, 242
Bse3DI GCAATG 1 cut(s) 309
BseGI GGATG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 73
Bsp68I TCGCGA 1 cut(s) 158
BspACI CCGC 1 cut(s) 280
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 309
BssMI GATC 1 cut(s) 73
BssNI GRCGYC 3 cut(s) 5, 147, 242
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 3 cut(s) 5, 147, 242
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 204
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 155, 305
BstUI CGCG 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
BtuMI TCGCGA 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 155
CviJI RGCY 3 cut(s) 181, 202, 206
CviKI_1 RGCY 3 cut(s) 181, 202, 206
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DriI GACNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 107
Eam1105I GACNNNNNGTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 107
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 1 cut(s) 71
FaqI GGGAC 1 cut(s) 44
FauI CCCGC 1 cut(s) 287
FokI GGATG 1 cut(s) 256
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 3 cut(s) 5, 147, 242
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HphI GGTGA 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 157, 232
Hpy99I CGWCG 3 cut(s) 149, 247, 299
HpyAV CCTTC 5 cut(s) 25, 73, 106, 130, 181
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 305
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 3 cut(s) 5, 147, 242
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 188, 191
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 242
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 94, 187, 246, 277
MflI RGATCY 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 5
MseI TTAA 1 cut(s) 331
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 155, 305
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 244
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 244
RruI TCGCGA 1 cut(s) 158
SaqAI TTAA 1 cut(s) 331
Sau3AI GATC 1 cut(s) 73
SfoI GGCGCC 1 cut(s) 6
SsiI CCGC 1 cut(s) 280
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 191
TaiI ACGT 1 cut(s) 245
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 310
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 244
XspI CTAG 1 cut(s) 191
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.