Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001058.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

45088 .. 45889

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001058.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggagaaatatgggtatgaccatgatggagttttcaggtcactcaaaccacctctggtattacccagagacccaaatctcaccatggtctctttcctctttagaaactattcttcttatccatacaaatttgccctcattgatgctgggtcctctgaaatcatgtccttctcccatctcaagtccatggtcatcaagattgcgcatggcttagtccatctgagtctagagttagaatctcagctccatccagtgtccagcagatttgagggacctggtacccacgatcgatccggcactttgatagcaccattttcctcctcttctgggccttcagtagcctcacacaccattgccatcctctctaagaagaaggaacctaactatagtattgagcaaacttttgcagatgataattctattagatttgggtctttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

146

Amino Acids

16.21

Weight (kDa)

7.07

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	204
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	63, 94
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	3 cut(s)	150, 272, 329
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	150, 272
BanI	GGYRCC	1 cut(s)	278
BccI	CCATC	5 cut(s)	20, 183, 225, 255, 365
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	63, 94
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	150, 272
BmgT120I	GGNCC	3 cut(s)	150, 272, 329
BmiI	GGNNCC	4 cut(s)	151, 273, 280, 378
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	289
BsaI	GGTCTC	2 cut(s)	63, 94
BsaJI	CCNNGG	2 cut(s)	84, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	84, 186
BseGI	GGATG	2 cut(s)	247, 357
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	212, 254
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	2 cut(s)	63, 94
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	2 cut(s)	63, 94
Bsp143I	GATC	2 cut(s)	286, 290
Bsp19I	CCATGG	2 cut(s)	84, 186
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	213, 253
BspDI	ATCGAT	1 cut(s)	289
BspLI	GGNNCC	4 cut(s)	151, 273, 280, 378
BspPI	GGATC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	2 cut(s)	63, 94
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	84, 186
BssMI	GATC	2 cut(s)	286, 290
BssT1I	CCWWGG	2 cut(s)	84, 186
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	211, 221, 240, 366
BstDSI	CCRYGG	2 cut(s)	84, 186
BstF5I	GGATG	2 cut(s)	247, 357
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	289, 293
BstMAI	GTCTC	2 cut(s)	63, 94
BstMBI	GATC	2 cut(s)	286, 290
BstMCI	CGRYCG	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	331
BsuTUI	ATCGAT	1 cut(s)	289
BtgI	CCRYGG	2 cut(s)	84, 186
BtsCI	GGATG	2 cut(s)	247, 357
BtsIMutI	CAGTG	1 cut(s)	258
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	150, 272, 329
ClaI	ATCGAT	1 cut(s)	289
CsiI	ACCWGGT	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	5 cut(s)	23, 85, 163, 187, 206
CviJI	RGCY	4 cut(s)	210, 244, 331, 341
CviKI_1	RGCY	4 cut(s)	210, 244, 331, 341
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	4 cut(s)	211, 221, 240, 366
DpnI	GATC	2 cut(s)	288, 292
DpnII	GATC	2 cut(s)	286, 290
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	84, 186
Eco31I	GGTCTC	2 cut(s)	63, 94
Eco47I	GGWCC	2 cut(s)	150, 272
Eco57I	CTGAAG	1 cut(s)	318
EcoO109I	RGGNCCY	2 cut(s)	150, 272
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	84, 186
ErhI	CCWWGG	2 cut(s)	84, 186
FaeI	CATG	5 cut(s)	26, 88, 166, 190, 209
FaiI	YATR	9 cut(s)	12, 18, 24, 86, 124, 164, 188, 207, 387
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	5 cut(s)	22, 84, 162, 186, 205
FokI	GGATG	2 cut(s)	234, 344
FspBI	CTAG	1 cut(s)	227
FspI	TGCGCA	1 cut(s)	204
GlaI	GCGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	5 cut(s)	26, 88, 166, 190, 209
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	223, 236
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	157, 222
Hpy188III	TCNNGA	2 cut(s)	196, 227
HpyAV	CCTTC	3 cut(s)	178, 342, 367
HpyCH4V	TGCA	1 cut(s)	407
HpyF3I	CTNAG	4 cut(s)	211, 221, 240, 366
Hsp92II	CATG	5 cut(s)	26, 88, 166, 190, 209
HspAI	GCGC	1 cut(s)	203
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	286, 290
LmnI	GCTCC	1 cut(s)	249
LweI	GCATC	1 cut(s)	133
MabI	ACCWGGT	1 cut(s)	274
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	2 cut(s)	288, 292
MboI	GATC	2 cut(s)	286, 290
MboII	GAAGA	3 cut(s)	105, 315, 382
MluCI	AATT	2 cut(s)	128, 415
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	9 cut(s)	63, 107, 146, 163, 262, 328, 331, 352, 371
MroXI	GAANNNNTTC	1 cut(s)	109
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
NcoI	CCATGG	2 cut(s)	84, 186
NdeII	GATC	2 cut(s)	286, 290
NlaIII	CATG	5 cut(s)	26, 88, 166, 190, 209
NlaIV	GGNNCC	4 cut(s)	151, 273, 280, 378
NmuCI	GTSAC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	236
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PpuMI	RGGWCCY	2 cut(s)	150, 272
Psp5II	RGGWCCY	2 cut(s)	150, 272
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	4 cut(s)	151, 273, 280, 378
PspPI	GGNCC	3 cut(s)	150, 272, 329
PspPPI	RGGWCCY	2 cut(s)	150, 272
PvuI	CGATCG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	286, 290
Sau96I	GGNCC	3 cut(s)	150, 272, 329
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	5 cut(s)	41, 55, 246, 277, 382
SexAI	ACCWGGT	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	2 cut(s)	150, 272
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	128, 415
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	84, 186
TaqI	TCGA	1 cut(s)	289
TasI	AATT	2 cut(s)	128, 415
TfiI	GAWTC	1 cut(s)	236
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	39
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	150, 272
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.