Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

36905341 .. 36906150

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGAACGACGTCGTCCTCATCCTCTCCCCCAACTCCATCCACTTCCCCGTCTGCTTCTTCACCGTCATTGCCATCAGAGTCGTTGCCACCAGTTGTAATCCTATTTACACCGTCTACGAGCTCTCAAACCAAATCAAAGACTGCGACCCTAAGCTCATCATCACCGTCCCGGAACTCTGGCACAAAATGGAGAGCTTCAATGTTCCAACCAAGTACGTCTCCAATTTGATCAGAATATCAGACACTATTTCCGATTTACTGGCGGTTAGTGTCACACAGAGTGACGTGGCCGCACTGTTGTACTCGTCAGGTACGACCAGGAAAAGCAAGGGAGTGATTCTAACTCATCGGAACTTCATTACGGCGTCGTTGATGGTGACGGCGGACCAGGACAGTTACGGGGAGTCGAAACACGTGTTTTTGTGTTTTGTTCCCATGTTCAACATAATGGGGCTGTCGGTGATTTTGTACTCGCAGCTCAGGCGAGGCAACGTAGTCGTTTCGATGGCCAAGTTTGATATTAACAAGGCATTGAAGGCGATGGAGGAGTACAGGGTCACTCAATTGTTTGTCGTTCCGCCGGTGATGATTGCGCTGGCGAAGCAGAGTGTGGTTAACAAGTACGACTTGTCGTCGGTGAAGTTAATCGGGTCTGGTGTGGCACCGCTTGGAAAAGAGTTGATGGAGGAGACGGCCAAGAATATTCCTCAGGCTGCGATTATTCAGGTAGTTTTTTTTTTTTTTTTGACAAGAAGAATGGATTTCATTCATAGCAAACACAGGCAAGAATGGCCTAGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

268

Amino Acids

30.1

Weight (kDa)

9.1

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	2 - 243	1.5e-41	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	5 cut(s)	266, 294, 386, 581, 668
AcoI	YGGCCR	3 cut(s)	291, 510, 696
AcvI	CACGTG	1 cut(s)	418
AcyI	GRCGYC	2 cut(s)	12, 368
AdeI	CACNNNGTG	1 cut(s)	284
AfaI	GTAC	7 cut(s)	218, 305, 316, 473, 554, 626, 802
AflIII	ACRYGT	2 cut(s)	415, 417
AgsI	TTSAA	3 cut(s)	202, 445, 538
AhdI	GACNNNNNGTC	1 cut(s)	634
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	320, 390
AluBI	AGCT	4 cut(s)	124, 157, 198, 481
AluI	AGCT	4 cut(s)	124, 157, 198, 481
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	226, 686
AoxI	GGCC	4 cut(s)	291, 510, 696, 794
ApeKI	GCWGC	2 cut(s)	478, 716
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	6 cut(s)	55, 157, 391, 475, 598, 652
AvaII	GGWCC	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	126
BbrPI	CACGTG	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	490, 703
BccI	CCATC	6 cut(s)	47, 83, 370, 502, 538, 679
BceAI	ACGGC	3 cut(s)	381, 399, 711
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	2 cut(s)	322, 392
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	226, 686
BfaI	CTAG	1 cut(s)	798
BisI	GCNGC	3 cut(s)	294, 479, 717
BlsI	GCNGC	3 cut(s)	295, 480, 718
Bme1390I	CCNGG	3 cut(s)	173, 322, 392
Bme18I	GGWCC	1 cut(s)	388
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	3 cut(s)	173, 322, 392
Bpu10I	CCTNAGC	2 cut(s)	153, 482
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	2 cut(s)	12, 368
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	93, 267
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	322, 392
BseGI	GGATG	2 cut(s)	21, 39
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	496, 725
BseNI	ACTGG	2 cut(s)	93, 267
BseRI	GAGGAG	2 cut(s)	563, 704
BseXI	GCAGC	2 cut(s)	490, 703
BshFI	GGCC	4 cut(s)	293, 512, 698, 796
BshNI	GGYRCC	1 cut(s)	664
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	173, 584
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	226, 686
BsmBI	CGTCTC	2 cut(s)	226, 686
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	293, 512, 698, 796
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	5 cut(s)	266, 294, 386, 581, 668
BspANI	GGCC	4 cut(s)	293, 512, 698, 796
BspCNI	CTCAG	2 cut(s)	495, 724
BspLI	GGNNCC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	93, 267
BssAI	RCCGGY	1 cut(s)	583
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	2 cut(s)	12, 368
Bst2UI	CCWGG	2 cut(s)	322, 392
Bst4CI	ACNGT	5 cut(s)	67, 115, 169, 300, 398
BstACI	GRCGYC	2 cut(s)	12, 368
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	153, 482, 711
BstF5I	GGATG	2 cut(s)	21, 39
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	226, 686
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	484, 539, 604, 793
BstNI	CCWGG	2 cut(s)	322, 392
BstSCI	CCNGG	3 cut(s)	171, 320, 390
BstV1I	GCAGC	2 cut(s)	490, 703
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	4 cut(s)	293, 512, 698, 796
BtgZI	GCGATG	1 cut(s)	557
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	21, 39
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	7 cut(s)	217, 304, 315, 472, 553, 625, 801
CviAII	CATG	1 cut(s)	439
CviQI	GTAC	7 cut(s)	217, 304, 315, 472, 553, 625, 801
DdeI	CTNAG	3 cut(s)	153, 482, 711
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DraIII	CACNNNGTG	1 cut(s)	284
DriI	GACNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	3 cut(s)	291, 510, 696
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EciI	GGCGGA	2 cut(s)	401, 570
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	124
Eco72I	CACGTG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	320, 390
EcoT38I	GRGCYC	1 cut(s)	126
Esp3I	CGTCTC	2 cut(s)	226, 686
FaeI	CATG	1 cut(s)	442
FaiI	YATR	4 cut(s)	440, 449, 774, 805
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	294, 479, 717
FokI	GGATG	2 cut(s)	8, 26
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	294, 479, 717
FspBI	CTAG	1 cut(s)	798
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	3 cut(s)	294, 479, 717
HaeIII	GGCC	4 cut(s)	293, 512, 698, 796
HapII	CCGG	2 cut(s)	173, 584
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	2 cut(s)	12, 368
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	3 cut(s)	81, 340, 407
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	173, 584
HphI	GGTGA	6 cut(s)	55, 157, 391, 475, 598, 652
Hpy166II	GTNNAC	2 cut(s)	118, 619
Hpy188I	TCNGA	5 cut(s)	80, 236, 244, 256, 354
Hpy8I	GTNNAC	2 cut(s)	118, 619
Hpy99I	CGWCG	4 cut(s)	14, 17, 373, 640
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	5 cut(s)	67, 115, 169, 300, 398
HpyCH4IV	ACGT	5 cut(s)	12, 219, 288, 417, 495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	484, 539, 604, 793
HpyF3I	CTNAG	3 cut(s)	153, 482, 711
HpySE526I	ACGT	5 cut(s)	12, 219, 288, 417, 495
Hsp92I	GRCGYC	2 cut(s)	12, 368
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	596
Ksp22I	TGATCA	1 cut(s)	231
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	490, 703
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	5 cut(s)	12, 219, 288, 417, 495
MaeIII	GTNAC	5 cut(s)	274, 284, 379, 398, 559
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	16, 52, 768
MfeI	CAATTG	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	2 cut(s)	226, 566
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	90, 416
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	6 cut(s)	29, 35, 482, 541, 682, 720
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	3 cut(s)	525, 618, 647
Msp20I	TGGCCA	1 cut(s)	512
MspI	CCGG	2 cut(s)	173, 584
MspR9I	CCNGG	3 cut(s)	173, 322, 392
MunI	CAATTG	1 cut(s)	566
MvaI	CCWGG	2 cut(s)	322, 392
MwoI	GCNNNNNNNGC	4 cut(s)	484, 539, 604, 793
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	4 cut(s)	274, 284, 379, 559
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	340
PflFI	GACNNNGTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	295, 480, 718
PleI	GAGTC	2 cut(s)	89, 415
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	89, 415
Ppu21I	YACGTR	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	320, 390
PspCI	CACGTG	1 cut(s)	418
PspGI	CCWGG	2 cut(s)	320, 390
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	7 cut(s)	218, 305, 316, 473, 554, 626, 802
RsaNI	GTAC	7 cut(s)	217, 304, 315, 472, 553, 625, 801
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	525, 618, 647
SatI	GCNGC	3 cut(s)	294, 479, 717
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	90, 416
ScrFI	CCNGG	3 cut(s)	173, 322, 392
SduI	GDGCHC	1 cut(s)	126
SgrAI	CRCCGGYG	1 cut(s)	583
SinI	GGWCC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	226, 566
SsiI	CCGC	5 cut(s)	266, 294, 386, 581, 668
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	1 cut(s)	798
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	171, 320, 390
TaaI	ACNGT	5 cut(s)	67, 115, 169, 300, 398
TaiI	ACGT	5 cut(s)	15, 222, 291, 420, 498
TaqI	TCGA	2 cut(s)	410, 506
TasI	AATT	2 cut(s)	226, 566
TatI	WGTACW	4 cut(s)	303, 471, 552, 800
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	3 cut(s)	525, 618, 647
Tru9I	TTAA	3 cut(s)	525, 618, 647
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	4 cut(s)	274, 284, 379, 559
TseI	GCWGC	2 cut(s)	478, 716
Tsp45I	GTSAC	4 cut(s)	274, 284, 379, 559
TspDTI	ATGAA	4 cut(s)	17, 349, 757, 761
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	798
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.