Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

35760869 .. 35762870

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGATCGAAATGCCCAAAGGGCTCCCCTTTTCAGTTGATACATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTAGGATCTCCTCCCACTTTTCTTACCCGATTTACTCTACCCATCTCACCAAAACCGTCCTTCAACACTACCTCAAGCTTGATGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGACCCGGATGGAGCCTTCACTGATACGGCTTTCGATGCCAATCACTGTCCTGCTGAGGTTAGAAGTTGCTCCGATTTTGGACCCAGAAGCAAAGCACTCTCAGACACCGAGACAAAGCAATGGAGGATAAAACTGAGTCCATTTCATTCAACAAGAGAAGAGCGGAGGTTAACGATGAAATCTGTAATTGCTTGCATTGGTTTCTGGGTTGTGTTCCTTTCTTTGATTCTGGATAATTCAAAAGTGACTGACTCTGAGGTATACCCAATGTACAAGGCCTTTATCGAGCCAGATCTTCAAACTGCTCATATAGAAATTATCAACAAGTTCAATCCATTTACTGGATTTCTAAGTCCCACTTACATTTTAAAGTCAGTGAAGCCCTTGTCAGTGGATCAAATAAAGGCAGTCTTTACTGAGGAGCATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

223

Amino Acids

25.41

Weight (kDa)

7.8

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	2 cut(s)	122, 642
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	6 cut(s)	60, 173, 390, 480, 539, 571
AluBI	AGCT	2 cut(s)	187, 233
AluI	AGCT	2 cut(s)	187, 233
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	122, 642
AoxI	GGCC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	159, 242
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	4 cut(s)	26, 74, 253, 322
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	279
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	5 cut(s)	285, 354, 365, 486, 648
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	109
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	518
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	6, 114, 532, 634
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	5 cut(s)	286, 353, 366, 487, 649
BspLI	GGNNCC	4 cut(s)	26, 74, 253, 322
BspPI	GGATC	2 cut(s)	122, 642
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	586
BssMI	GATC	4 cut(s)	6, 114, 532, 634
BssNAI	GTATAC	1 cut(s)	502
Bst1107I	GTATAC	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	166, 287
Bst6I	CTCTTC	1 cut(s)	393
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	6 cut(s)	294, 340, 374, 495, 590, 657
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	4 cut(s)	9, 117, 535, 637
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	4 cut(s)	6, 114, 532, 634
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 275
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	114, 532
BstYI	RGATCY	2 cut(s)	114, 532
BstZ17I	GTATAC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	4 cut(s)	258, 283, 621, 636
Cac8I	GCNNGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	8 cut(s)	25, 187, 233, 254, 269, 518, 529, 622
CviKI_1	RGCY	8 cut(s)	25, 187, 233, 254, 269, 518, 529, 622
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	6 cut(s)	294, 340, 374, 495, 590, 657
DpnI	GATC	4 cut(s)	8, 116, 534, 636
DpnII	GATC	4 cut(s)	6, 114, 532, 634
DraI	TTTAAA	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	48
FaiI	YATR	6 cut(s)	46, 502, 549, 551, 666, 670
FalI	AAGNNNNNCTT	4 cut(s)	583, 615, 635, 667
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	501
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	49, 194, 376, 466, 491
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	411, 502
Hpy188I	TCNGA	3 cut(s)	313, 343, 496
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	2 cut(s)	411, 502
HpyAV	CCTTC	3 cut(s)	63, 179, 265
HpyCH4III	ACNGT	2 cut(s)	166, 287
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 275
HpyF3I	CTNAG	6 cut(s)	294, 340, 374, 495, 590, 657
Hsp92II	CATG	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	6, 114, 532, 634
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	4 cut(s)	30, 251, 314, 661
LpnPI	CCDG	7 cut(s)	258, 303, 337, 430, 455, 543, 567
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	4 cut(s)	8, 116, 534, 636
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	4 cut(s)	6, 114, 532, 634
MboII	GAAGA	3 cut(s)	48, 410, 527
MflI	RGATCY	2 cut(s)	114, 532
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	426, 475, 555
MlyI	GAGTC	3 cut(s)	58, 385, 485
MnlI	CCTC	8 cut(s)	63, 130, 191, 289, 357, 399, 490, 652
MseI	TTAA	4 cut(s)	83, 213, 410, 608
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	22, 275
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	4 cut(s)	6, 114, 532, 634
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	4 cut(s)	26, 74, 253, 322
NmuCI	GTSAC	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	194, 466
PflMI	CCANNNNNTGG	1 cut(s)	581
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	3 cut(s)	57, 384, 485
PpsI	GAGTC	3 cut(s)	57, 384, 485
PspN4I	GGNNCC	4 cut(s)	26, 74, 253, 322
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	114, 532
PvuI	CGATCG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	83, 213, 410, 608
Sau3AI	GATC	4 cut(s)	6, 114, 532, 634
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	3 cut(s)	58, 385, 485
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	183, 189, 235, 300, 410, 501
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	426, 475, 555
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	166, 287
TaqI	TCGA	4 cut(s)	5, 9, 273, 525
TasI	AATT	3 cut(s)	426, 475, 555
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	194, 466
Tru1I	TTAA	4 cut(s)	83, 213, 410, 608
Tru9I	TTAA	4 cut(s)	83, 213, 410, 608
TscAI	CASTG	4 cut(s)	265, 290, 621, 636
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	207, 374, 431
TspRI	CASTG	4 cut(s)	265, 290, 621, 636
Van91I	CCANNNNNTGG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.