RLG00000035153

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
61849109 .. 61853202
4094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035153

Sequence Viewer

Length: 1254 bp
ATGGAGAAATCTGGGTATGATCTCACCATGGTCTGTTTGCTTTTCAAAAACTGTTCTTCTTGTCCACACAAACCTGCCGTCATTGATGCCGAGTCCTCTGAAACCCTGTCCTTCTCCCAGTTCAAGTCAATGGTCATCAAGCTTGCCCATGGCTTAATCCATCTGGTTGGTGCCATTGCAACAACTTCAGATCCTCTCTACACTGTTTCAGAGCTTTCCAAGCAAGTTAAGGATTCCAATCCAAAACTGGTTATAAACAAGGGTTTAAATCTTCCAGCAGTGATTTTAGGACCGAAAGGTTCATCTTCCCAAATTGAATTCAGCTCAAGAATTGTGGGTTTTCATGATTTGGTTCAGTTATCTGGGCCTGTCTCGGATTTCCCTAGTGTAAATGGTGTGATTCTGACTCATGGGAATTTCATTGCTTCTTCTCTGATGGTTACGCAAGATCAAGAAGTGGCTGGAGGGATGCACCATGTGCTTCTTTGTGTGTTGCCAATGTTCCATGTGTTTGGATTGGCCGTCATCACTTACGCGCAGCTGCGAAAGGGAAATGCTGTGATTTCAATGTCCAGATTCAATCTGGAGAAGATTTTGATGACTGTTGAGAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAACCTTTCATCTTTGAAGCATATTGGGTCCGGTGCAGCTCCTCTGGGGAAAGAGTTAATGGAGGAGCGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTGTGGTATGACAGAAACCTGTGGAATTGTTTCAGTTGAGAATGCACTAGTAGGACCTCGACATAGTGATTCAGCTGGAACTCTTGTTTCCGGAGTTGAATCTCAGCTAGTCAGTGTAGATACGCTCAAACCTCTCCCTCCAAAGCTGCTGGGGGAGATATGGGTTAGGGGGCCTAATATGATGATAGGTTATTTGAACAACCCACAGGCCACCCAGCTAACTTTAGATAAAAATGGTTGGGTACATACTGGAAATCTTGGATACTTTGATGAAGGTGGCCAACTTTTTGTGGTTGACCGAATTAAAGAACTCATCAAGTATAAAGGTTTTCAGGCTAACATAGCTACATTTGATCGGTCTGCTGAGAGGAGGTGTTGGCGTTCGTCACCACATATCAGTGGAGAGTGTCTGGTGTTGACTGTTGAGGCCGCTGATTCAGTGCTTGTCTTTGTATCACTGTGA

Protein Analysis

418

Amino Acids

45.14

Weight (kDa)

8.05

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 132 - 329 4.7e-41 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 170
AccII CGCG 1 cut(s) 536
AccIII TCCGGA 1 cut(s) 881
AciI CCGC 1 cut(s) 1221
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 2 cut(s) 519, 1069
AcsI RAATTY 2 cut(s) 317, 415
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 3 cut(s) 614, 686, 1035
AfiI CCNNNNNNNGG 2 cut(s) 630, 631
AgsI TTSAA 8 cut(s) 46, 124, 317, 567, 580, 703, 890, 988
AhlI ACTAGT 1 cut(s) 838
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 881
AoxI GGCC 6 cut(s) 365, 519, 962, 999, 1069, 1218
ApeKI GCWGC 4 cut(s) 538, 541, 722, 937
ApoI RAATTY 2 cut(s) 317, 415
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
Asp700I GAANNNNTTC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 5 cut(s) 290, 365, 714, 845, 962
AsuHPI GGTGA 3 cut(s) 16, 613, 1170
AvaII GGWCC 3 cut(s) 290, 714, 845
BalI TGGCCA 1 cut(s) 1071
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 528, 550, 734, 924
BccI CCATC 2 cut(s) 168, 430
BceAI ACGGC 2 cut(s) 62, 506
BciVI GTATCC 1 cut(s) 1046
BcoDI GTCTC 1 cut(s) 376
BcuI ACTAGT 1 cut(s) 838
BfaI CTAG 3 cut(s) 384, 839, 899
BfuAI ACCTGC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 1046
BisI GCNGC 5 cut(s) 539, 542, 723, 938, 1221
BlsI GCNGC 5 cut(s) 540, 543, 724, 939, 1222
Bme18I GGWCC 3 cut(s) 290, 714, 845
BmgT120I GGNCC 5 cut(s) 290, 365, 714, 845, 962
BmiI GGNNCC 3 cut(s) 172, 715, 963
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 76, 459
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 2 cut(s) 483, 605
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 310, 756
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 27, 148
BsaWI WCCGGW 2 cut(s) 716, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 631
Bse1I ACTGG 3 cut(s) 118, 252, 1045
Bse3DI GCAATG 2 cut(s) 174, 420
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 881
BseDI CCNNGG 2 cut(s) 27, 148
BseGI GGATG 1 cut(s) 474
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 630, 631
BseMI GCAATG 2 cut(s) 174, 420
BseMII CTCAG 3 cut(s) 800, 908, 1146
BseNI ACTGG 3 cut(s) 118, 252, 1045
BseRI GAGGAG 3 cut(s) 717, 764, 1174
BseXI GCAGC 4 cut(s) 528, 550, 734, 924
BseYI CCCAGC 2 cut(s) 940, 1005
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 6 cut(s) 367, 521, 964, 1001, 1071, 1220
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 717, 882
BslI CCNNNNNNNGG 2 cut(s) 630, 631
BsmAI GTCTC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 6 cut(s) 367, 521, 964, 1001, 1071, 1220
Bsp13I TCCGGA 1 cut(s) 881
Bsp143I GATC 4 cut(s) 19, 190, 448, 1144
Bsp19I CCATGG 2 cut(s) 27, 148
BspACI CCGC 1 cut(s) 1221
BspANI GGCC 6 cut(s) 367, 521, 964, 1001, 1071, 1220
BspCNI CTCAG 3 cut(s) 799, 907, 1147
BspEI TCCGGA 1 cut(s) 881
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 172, 715, 963
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 174, 420
BsrI ACTGG 3 cut(s) 118, 252, 1045
BssECI CCNNGG 2 cut(s) 27, 148
BssMI GATC 4 cut(s) 19, 190, 448, 1144
BssT1I CCWWGG 2 cut(s) 27, 148
Bst4CI ACNGT 6 cut(s) 53, 205, 604, 671, 1213, 1251
BstAPI GCANNNNNTGC 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 144, 756
BstDEI CTNAG 3 cut(s) 786, 894, 1155
BstDSI CCRYGG 2 cut(s) 27, 148
BstEII GGTNACC 1 cut(s) 619
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 1 cut(s) 536
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 4 cut(s) 22, 193, 451, 1147
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 19, 190, 448, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 220, 478, 1133
BstPI GGTNACC 1 cut(s) 619
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 4 cut(s) 528, 550, 734, 924
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 2 cut(s) 167, 512
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 6 cut(s) 367, 521, 964, 1001, 1071, 1220
BtgI CCRYGG 2 cut(s) 27, 148
BtsCI GGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 7 cut(s) 201, 285, 676, 910, 1195, 1236, 1247
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 144, 756
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 5 cut(s) 290, 365, 714, 845, 962
Csp6I GTAC 3 cut(s) 613, 685, 1034
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 6 cut(s) 28, 149, 344, 410, 476, 506
CviQI GTAC 3 cut(s) 613, 685, 1034
DdeI CTNAG 3 cut(s) 786, 894, 1155
DpnI GATC 4 cut(s) 21, 192, 450, 1146
DpnII GATC 4 cut(s) 19, 190, 448, 1144
DraI TTTAAA 1 cut(s) 267
DraIII CACNNNGTG 1 cut(s) 478
EaeI YGGCCR 2 cut(s) 519, 1069
Eco130I CCWWGG 2 cut(s) 27, 148
Eco47I GGWCC 3 cut(s) 290, 714, 845
Eco57I CTGAAG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 619
EcoO109I RGGNCCY 2 cut(s) 845, 962
EcoO65I GGTNACC 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 27, 148
ErhI CCWWGG 2 cut(s) 27, 148
FaeI CATG 6 cut(s) 31, 152, 347, 413, 479, 509
FatI CATG 6 cut(s) 27, 148, 343, 409, 475, 505
Fnu4HI GCNGC 5 cut(s) 539, 542, 723, 938, 1221
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 539, 542, 723, 938, 1221
FspBI CTAG 3 cut(s) 384, 839, 899
GlaI GCGC 1 cut(s) 537
GluI GCNGC 5 cut(s) 539, 542, 723, 938, 1221
GsaI CCCAGC 2 cut(s) 944, 1009
GsuI CTGGAG 2 cut(s) 483, 605
HaeIII GGCC 6 cut(s) 367, 521, 964, 1001, 1071, 1220
HapII CCGG 2 cut(s) 717, 882
HhaI GCGC 1 cut(s) 538
Hin1II CATG 6 cut(s) 31, 152, 347, 413, 479, 509
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 2 cut(s) 1087, 1209
HindII GTYRAC 2 cut(s) 1087, 1209
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 8 cut(s) 92, 233, 400, 406, 576, 860, 890, 1226
HpaII CCGG 2 cut(s) 717, 882
HphI GGTGA 3 cut(s) 16, 613, 1170
Hpy166II GTNNAC 3 cut(s) 65, 1087, 1209
Hpy188I TCNGA 6 cut(s) 100, 190, 211, 376, 405, 435
Hpy188III TCNNGA 6 cut(s) 327, 344, 452, 573, 584, 882
Hpy8I GTNNAC 3 cut(s) 65, 1087, 1209
HpyAV CCTTC 2 cut(s) 121, 1058
HpyCH4III ACNGT 6 cut(s) 53, 205, 604, 671, 1213, 1251
HpyCH4V TGCA 5 cut(s) 179, 472, 722, 758, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 478, 1133
HpyF3I CTNAG 3 cut(s) 786, 894, 1155
Hsp92II CATG 6 cut(s) 31, 152, 347, 413, 479, 509
HspAI GCGC 1 cut(s) 536
Kpn2I TCCGGA 1 cut(s) 881
Kzo9I GATC 4 cut(s) 19, 190, 448, 1144
LmnI GCTCC 2 cut(s) 730, 751
Lsp1109I GCAGC 4 cut(s) 528, 550, 734, 924
LweI GCATC 2 cut(s) 76, 459
MaeI CTAG 3 cut(s) 384, 839, 899
MaeIII GTNAC 3 cut(s) 439, 619, 1176
MalI GATC 4 cut(s) 21, 192, 450, 1146
MboI GATC 4 cut(s) 19, 190, 448, 1144
MboII GAAGA 5 cut(s) 48, 263, 297, 420, 601
MflI RGATCY 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 1071
MluCI AATT 7 cut(s) 312, 317, 330, 415, 762, 816, 1092
MluNI TGGCCA 1 cut(s) 1071
MlyI GAGTC 2 cut(s) 101, 400
Mox20I TGGCCA 1 cut(s) 1071
MroI TCCGGA 1 cut(s) 881
MroXI GAANNNNTTC 1 cut(s) 820
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 6 cut(s) 155, 228, 266, 678, 743, 1095
MslI CAYNNNNRTG 1 cut(s) 1188
Msp20I TGGCCA 1 cut(s) 1071
MspA1I CMGCKG 3 cut(s) 541, 866, 1223
MspI CCGG 2 cut(s) 717, 882
Mva1269I GAATGC 1 cut(s) 838
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 3 cut(s) 220, 478, 1133
NcoI CCATGG 2 cut(s) 27, 148
NdeII GATC 4 cut(s) 19, 190, 448, 1144
NlaIII CATG 6 cut(s) 31, 152, 347, 413, 479, 509
NlaIV GGNNCC 3 cut(s) 172, 715, 963
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 2 cut(s) 619, 1176
PagI TCATGA 1 cut(s) 343
PctI GAATGC 1 cut(s) 838
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 6 cut(s) 233, 400, 576, 860, 890, 1226
PkrI GCNGC 5 cut(s) 540, 543, 724, 939, 1222
PleI GAGTC 2 cut(s) 100, 400
PpsI GAGTC 2 cut(s) 100, 400
PpuMI RGGWCCY 1 cut(s) 845
PsiI TTATAA 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 845
PspEI GGTNACC 1 cut(s) 619
PspFI CCCAGC 2 cut(s) 940, 1005
PspN4I GGNNCC 3 cut(s) 172, 715, 963
PspPI GGNCC 5 cut(s) 290, 365, 714, 845, 962
PspPPI RGGWCCY 1 cut(s) 845
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 541, 866
RsaI GTAC 3 cut(s) 614, 686, 1035
RsaNI GTAC 3 cut(s) 613, 685, 1034
RseI CAYNNNNRTG 1 cut(s) 1188
SaqAI TTAA 6 cut(s) 155, 228, 266, 678, 743, 1095
SatI GCNGC 5 cut(s) 539, 542, 723, 938, 1221
Sau3AI GATC 4 cut(s) 19, 190, 448, 1144
Sau96I GGNCC 5 cut(s) 290, 365, 714, 845, 962
SchI GAGTC 2 cut(s) 101, 400
SfaNI GCATC 2 cut(s) 76, 459
SinI GGWCC 3 cut(s) 290, 714, 845
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 2 cut(s) 325, 771
SmoI CTYRAG 2 cut(s) 325, 771
SpeI ACTAGT 1 cut(s) 838
Sse9I AATT 7 cut(s) 312, 317, 330, 415, 762, 816, 1092
SsiI CCGC 1 cut(s) 1221
SspMI CTAG 3 cut(s) 384, 839, 899
StyI CCWWGG 2 cut(s) 27, 148
TaaI ACNGT 6 cut(s) 53, 205, 604, 671, 1213, 1251
TaqI TCGA 1 cut(s) 850
TaqII GACCGA 3 cut(s) 307, 1104, 1137
TasI AATT 7 cut(s) 312, 317, 330, 415, 762, 816, 1092
TatI WGTACW 2 cut(s) 612, 684
TauI GCSGC 1 cut(s) 1223
TfiI GAWTC 6 cut(s) 233, 400, 576, 860, 890, 1226
Tru1I TTAA 6 cut(s) 155, 228, 266, 678, 743, 1095
Tru9I TTAA 6 cut(s) 155, 228, 266, 678, 743, 1095
TscAI CASTG 7 cut(s) 208, 285, 676, 910, 1195, 1236, 1254
TseFI GTSAC 2 cut(s) 619, 1176
TseI GCWGC 4 cut(s) 538, 541, 722, 937
Tsp45I GTSAC 2 cut(s) 619, 1176
TspDTI ATGAA 5 cut(s) 291, 332, 409, 684, 1077
TspRI CASTG 7 cut(s) 208, 285, 676, 910, 1195, 1236, 1254
VpaK11BI GGWCC 3 cut(s) 290, 714, 845
XapI RAATTY 2 cut(s) 317, 415
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 580
XmnI GAANNNNTTC 1 cut(s) 820
XspI CTAG 3 cut(s) 384, 839, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.