Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009763.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

19662 .. 20216

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009763.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggagaaatatgggtatgaccatgatggagttttcaggtcactcaaaccacctctggtattacccagagacccaaatctcaccatggtctctttcctctttagaaactattcttcttatccatacaaacttgccctcattgatgctgggtcctctgaaaccatgtccttctcccatctcaagtccatggtcatcaagattgcgcatggcttagtccatttgaccctaatagcaaccacatggtgtggtgtgttggtcgagctgcctagtctggaacccccaggtctagagttcgaatctcagctccatccagtggccagcagatttgagagacctgggttagttaaaacaccaaatggtttgtgcgtctgcagtgcagtgattagtctggctatgctgggatacactgcatgggtgtttgtgttggttctattgacgtcttccactcaaaaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

152

Amino Acids

16.82

Weight (kDa)

7.76

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	280, 334
AluBI	AGCT	2 cut(s)	262, 304
AluI	AGCT	2 cut(s)	262, 304
Alw26I	GTCTC	3 cut(s)	63, 94, 325
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	262
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	20, 183, 315
BciT130I	CCWGG	2 cut(s)	282, 336
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	63, 94, 325
BfaI	CTAG	3 cut(s)	267, 287, 457
BfmI	CTRYAG	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	282, 336
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	151, 276
BmrFI	CCNGG	2 cut(s)	282, 336
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	437
BsaI	GGTCTC	3 cut(s)	63, 94, 325
BsaJI	CCNNGG	4 cut(s)	84, 186, 280, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	282, 336
BseDI	CCNNGG	4 cut(s)	84, 186, 280, 335
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	2 cut(s)	146, 397
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	63, 94, 325
BsnI	GGCC	1 cut(s)	317
Bso31I	GGTCTC	3 cut(s)	63, 94, 325
Bsp119I	TTCGAA	1 cut(s)	294
Bsp19I	CCATGG	2 cut(s)	84, 186
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	151, 276
BspMAI	CTGCAG	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	294
BspTNI	GGTCTC	3 cut(s)	63, 94, 325
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	84, 186, 280, 335
BssNI	GRCGYC	1 cut(s)	437
BssT1I	CCWWGG	2 cut(s)	84, 186
Bst2UI	CCWGG	2 cut(s)	282, 336
BstACI	GRCGYC	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	211, 300
BstDSI	CCRYGG	2 cut(s)	84, 186
BstF5I	GGATG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	205
BstMAI	GTCTC	3 cut(s)	63, 94, 325
BstNI	CCWGG	2 cut(s)	282, 336
BstSCI	CCNGG	2 cut(s)	280, 334
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	2 cut(s)	84, 186
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	3 cut(s)	379, 384, 405
BtsIMutI	CAGTG	4 cut(s)	318, 379, 384, 405
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	355
CviAII	CATG	7 cut(s)	23, 85, 163, 187, 206, 240, 411
CviJI	RGCY	5 cut(s)	210, 262, 304, 317, 392
CviKI_1	RGCY	5 cut(s)	210, 262, 304, 317, 392
DdeI	CTNAG	2 cut(s)	211, 300
DraIII	CACNNNGTG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	84, 186
Eco31I	GGTCTC	3 cut(s)	63, 94, 325
Eco47I	GGWCC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	280, 334
EcoT14I	CCWWGG	2 cut(s)	84, 186
ErhI	CCWWGG	2 cut(s)	84, 186
FaeI	CATG	7 cut(s)	26, 88, 166, 190, 209, 243, 414
FatI	CATG	7 cut(s)	22, 84, 162, 186, 205, 239, 410
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	3 cut(s)	267, 287, 457
FspI	TGCGCA	1 cut(s)	204
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	2 cut(s)	150, 401
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	7 cut(s)	26, 88, 166, 190, 209, 243, 414
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	196, 272, 287
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	372, 377, 410
HpyF3I	CTNAG	2 cut(s)	211, 300
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	7 cut(s)	26, 88, 166, 190, 209, 243, 414
HspAI	GCGC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	267, 287, 457
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	105, 432
MlsI	TGGCCA	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	317
MnlI	CCTC	4 cut(s)	63, 107, 146, 163
Mox20I	TGGCCA	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	282, 336
MvaI	CCWGG	2 cut(s)	282, 336
NcoI	CCATGG	2 cut(s)	84, 186
NlaIII	CATG	7 cut(s)	26, 88, 166, 190, 209, 243, 414
NlaIV	GGNNCC	2 cut(s)	151, 276
NmuCI	GTSAC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	264
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	280, 334
PspFI	CCCAGC	2 cut(s)	146, 397
PspGI	CCWGG	2 cut(s)	280, 334
PspN4I	GGNNCC	2 cut(s)	151, 276
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	263
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	282, 336
SetI	ASST	7 cut(s)	41, 55, 264, 286, 306, 337, 440
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SspMI	CTAG	3 cut(s)	267, 287, 457
StyD4I	CCNGG	2 cut(s)	280, 334
StyI	CCWWGG	2 cut(s)	84, 186
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	258, 294
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	4 cut(s)	318, 379, 384, 412
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	39
TspRI	CASTG	4 cut(s)	318, 379, 384, 412
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	150
XbaI	TCTAGA	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	3 cut(s)	267, 287, 457
ZraI	GACGTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.