pycom10g19750

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
22817720 .. 22818650
931 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19750.2

Sequence Viewer

Length: 885 bp
ATGCAGTTCTATACATACGAAAAATCCAAATTTTCTCAGTCCCAAACATCCATGGCGCCAAAATCCTTCAACCCCGAAACCCAAACCTACACCTCTCCCCGACCTCCCATCCCCTTCTCCACCGATCCCAACCTCTCTCTCACCGCCTTTCTCTTCCACACCTCCTCCTCTTTCCCTCAGAGCCTCGCCCTCGCCGACGCTGCAACCGACGAAACCCTAACCTTCCTCCAGCTCAAATCCTTAGTCTTTCGTATCTCACAGGCCTTCCTCAATCTCAACGTCCAGAAAAAAACGTCGTTCTTATCTTCGCTTCCAATTCCATCCTCTTCCCCGTCTGCTTCTTCTCAATCGCCGCAGTCGACGCCACCGCCACCACGATTGCAATCCGAAGCTCATCATCACGTCTCCGAACTATTGCCGAAGATCGAGGGCTTCAATCTCCCAATTCGATACCGGAATATGAATATCCATTCCTTCTCCGATTTGATTAAGCTTTCGGACGATTCGGATCCGATTTCCGGTTTACCGGCTGTTAATGTGAATCAGAGTGACGTGGTGGCGCTGCTCTACTCGTTCGGGACGACTGGGAAGAGCAAGGGAGTGGTTATGACGCATCGGAACTTCATTACAACGTCGTTGATGGTCACGGCCGATCAGGACCGGTACAGCGAGCCGCGCCACGTGTTTCTGTGCTTTGTCCCGATGTTTCACTTATTTGGGCTGTTGGTGATTTTGTACTGGCAACTCCGGCGAGGGAACGCTGTCGTTACGATGGCGAAGTTTGACATCGACAGGGCGTTGAAGGCGGTGGAGAGGTACAGGGTTACGTATTTATTCGTGGTTCCGCCGGTGGTGATCGCGCTGACAAAGCAGAGCGTTGTTTAG

Protein Analysis

295

Amino Acids

32.9

Weight (kDa)

9.38

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 359
AccII CGCG 2 cut(s) 676, 860
AciI CCGC 6 cut(s) 144, 353, 368, 674, 806, 845
AclWI GGATC 3 cut(s) 119, 503, 516
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 1 cut(s) 29
AcvI CACGTG 1 cut(s) 682
AcyI GRCGYC 2 cut(s) 56, 362
AfaI GTAC 3 cut(s) 665, 737, 818
AfiI CCNNNNNNNGG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 681
AgeI ACCGGT 1 cut(s) 660
AgsI TTSAA 3 cut(s) 70, 436, 802
AjiI CACGTC 2 cut(s) 403, 553
AluBI AGCT 3 cut(s) 232, 392, 493
AluI AGCT 3 cut(s) 232, 392, 493
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 3 cut(s) 119, 503, 516
AoxI GGCC 2 cut(s) 261, 648
ApeKI GCWGC 2 cut(s) 200, 562
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AsiGI ACCGGT 1 cut(s) 660
AspLEI GCGC 4 cut(s) 58, 562, 678, 862
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 133, 739, 865
AvaII GGWCC 1 cut(s) 658
BamHI GGATCC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 55
BbrPI CACGTG 1 cut(s) 682
BbvI GCAGC 2 cut(s) 187, 549
BccI CCATC 4 cut(s) 116, 328, 634, 766
BceAI ACGGC 1 cut(s) 663
BcoDI GTCTC 1 cut(s) 409
BfoI RGCGCY 2 cut(s) 59, 563
BisI GCNGC 4 cut(s) 201, 353, 563, 674
BlsI GCNGC 4 cut(s) 202, 354, 564, 675
Bme18I GGWCC 1 cut(s) 658
BmgBI CACGTC 2 cut(s) 403, 553
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 3 cut(s) 57, 510, 843
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 212
BsaAI YACGTR 2 cut(s) 682, 828
BsaBI GATNNNNATC 2 cut(s) 382, 507
BsaHI GRCGYC 2 cut(s) 56, 362
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 3 cut(s) 453, 518, 660
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse118I RCCGGY 3 cut(s) 526, 660, 847
Bse1I ACTGG 2 cut(s) 589, 743
Bse8I GATNNNNATC 2 cut(s) 382, 507
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 47, 108, 320
BseJI GATNNNNATC 2 cut(s) 382, 507
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMII CTCAG 2 cut(s) 50, 191
BseNI ACTGG 2 cut(s) 589, 743
BseRI GAGGAG 2 cut(s) 154, 157
BseX3I CGGCCG 1 cut(s) 648
BseXI GCAGC 2 cut(s) 187, 549
Bsh1236I CGCG 2 cut(s) 676, 860
Bsh1285I CGRYCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 263, 650
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 660
BsiEI CGRYCG 1 cut(s) 651
BsiSI CCGG 6 cut(s) 454, 519, 527, 661, 748, 848
BslFI GGGAC 3 cut(s) 25, 592, 683
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 3 cut(s) 25, 592, 683
BsnI GGCC 2 cut(s) 263, 650
Bsp143I GATC 5 cut(s) 124, 423, 508, 652, 855
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 6 cut(s) 144, 353, 368, 674, 806, 845
BspANI GGCC 2 cut(s) 263, 650
BspCNI CTCAG 2 cut(s) 49, 190
BspFNI CGCG 2 cut(s) 676, 860
BspLI GGNNCC 3 cut(s) 57, 510, 843
BspPI GGATC 3 cut(s) 119, 503, 516
BspQI GCTCTTC 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 3 cut(s) 526, 660, 847
BsrI ACTGG 2 cut(s) 589, 743
BssAI RCCGGY 3 cut(s) 526, 660, 847
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 5 cut(s) 124, 423, 508, 652, 855
BssNI GRCGYC 2 cut(s) 56, 362
BssT1I CCWWGG 1 cut(s) 51
Bst6I CTCTTC 3 cut(s) 158, 331, 584
BstACI GRCGYC 2 cut(s) 56, 362
BstBAI YACGTR 2 cut(s) 682, 828
BstC8I GCNNGC 1 cut(s) 671
BstDEI CTNAG 3 cut(s) 36, 177, 241
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 47, 108, 320
BstFNI CGCG 2 cut(s) 676, 860
BstH2I RGCGCY 2 cut(s) 59, 563
BstHHI GCGC 4 cut(s) 58, 562, 678, 862
BstKTI GATC 5 cut(s) 127, 426, 511, 655, 858
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 5 cut(s) 124, 423, 508, 652, 855
BstMCI CGRYCG 1 cut(s) 651
BstMWI GCNNNNNNNGC 6 cut(s) 200, 361, 675, 748, 803, 868
BstSNI TACGTA 1 cut(s) 828
BstUI CGCG 2 cut(s) 676, 860
BstV1I GCAGC 2 cut(s) 187, 549
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BstZI CGGCCG 1 cut(s) 648
BsuRI GGCC 2 cut(s) 263, 650
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 2 cut(s) 403, 553
BtsCI GGATG 3 cut(s) 47, 108, 320
Cac8I GCNNGC 1 cut(s) 671
CfoI GCGC 4 cut(s) 58, 562, 678, 862
Cfr10I RCCGGY 3 cut(s) 526, 660, 847
Cfr13I GGNCC 1 cut(s) 658
CseI GACGC 3 cut(s) 206, 370, 619
Csp6I GTAC 3 cut(s) 664, 736, 817
CspAI ACCGGT 1 cut(s) 660
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 1 cut(s) 52
CviQI GTAC 3 cut(s) 664, 736, 817
DdeI CTNAG 3 cut(s) 36, 177, 241
DinI GGCGCC 1 cut(s) 57
DpnI GATC 5 cut(s) 126, 425, 510, 654, 857
DpnII GATC 5 cut(s) 124, 423, 508, 652, 855
EaeI YGGCCR 1 cut(s) 648
EagI CGGCCG 1 cut(s) 648
Eam1104I CTCTTC 3 cut(s) 158, 331, 584
EarI CTCTTC 3 cut(s) 158, 331, 584
EciI GGCGGA 1 cut(s) 834
EclXI CGGCCG 1 cut(s) 648
Eco105I TACGTA 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 658
Eco52I CGGCCG 1 cut(s) 648
Eco72I CACGTG 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 1 cut(s) 55
FaiI YATR 5 cut(s) 12, 16, 53, 461, 608
FaqI GGGAC 3 cut(s) 25, 592, 683
FatI CATG 1 cut(s) 51
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 4 cut(s) 201, 353, 563, 674
FokI GGATG 3 cut(s) 34, 95, 307
Fsp4HI GCNGC 4 cut(s) 201, 353, 563, 674
GlaI GCGC 4 cut(s) 57, 561, 677, 861
GluI GCNGC 4 cut(s) 201, 353, 563, 674
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 59, 563
HaeIII GGCC 2 cut(s) 263, 650
HapII CCGG 6 cut(s) 454, 519, 527, 661, 748, 848
HgaI GACGC 3 cut(s) 206, 370, 619
HhaI GCGC 4 cut(s) 58, 562, 678, 862
Hin1I GRCGYC 2 cut(s) 56, 362
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 4 cut(s) 56, 560, 676, 860
HinP1I GCGC 4 cut(s) 56, 560, 676, 860
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 2 cut(s) 503, 541
HpaII CCGG 6 cut(s) 454, 519, 527, 661, 748, 848
HphI GGTGA 3 cut(s) 133, 739, 865
Hpy166II GTNNAC 2 cut(s) 360, 524
Hpy188I TCNGA 9 cut(s) 180, 388, 409, 481, 499, 508, 513, 546, 618
Hpy188III TCNNGA 4 cut(s) 283, 577, 656, 700
Hpy8I GTNNAC 2 cut(s) 360, 524
Hpy99I CGWCG 5 cut(s) 200, 212, 298, 364, 637
HpyAV CCTTC 6 cut(s) 76, 124, 232, 274, 484, 796
HpyCH4IV ACGT 7 cut(s) 279, 293, 402, 552, 632, 681, 827
HpyCH4V TGCA 3 cut(s) 4, 203, 382
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 361, 675, 748, 803, 868
HpyF3I CTNAG 3 cut(s) 36, 177, 241
HpySE526I ACGT 7 cut(s) 279, 293, 402, 552, 632, 681, 827
Hsp92I GRCGYC 2 cut(s) 56, 362
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 4 cut(s) 56, 560, 676, 860
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 5 cut(s) 124, 423, 508, 652, 855
LguI GCTCTTC 1 cut(s) 584
Lsp1109I GCAGC 2 cut(s) 187, 549
LweI GCATC 1 cut(s) 622
MaeII ACGT 7 cut(s) 279, 293, 402, 552, 632, 681, 827
MaeIII GTNAC 4 cut(s) 548, 643, 766, 823
MalI GATC 5 cut(s) 126, 425, 510, 654, 857
MboI GATC 5 cut(s) 124, 423, 508, 652, 855
MboII GAAGA 6 cut(s) 145, 297, 318, 333, 433, 601
MflI RGATCY 1 cut(s) 508
MluCI AATT 3 cut(s) 29, 315, 444
Mly113I GGCGCC 1 cut(s) 56
MseI TTAA 2 cut(s) 489, 534
MspI CCGG 6 cut(s) 454, 519, 527, 661, 748, 848
MvnI CGCG 2 cut(s) 676, 860
MwoI GCNNNNNNNGC 6 cut(s) 200, 361, 675, 748, 803, 868
NarI GGCGCC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 51
NdeII GATC 5 cut(s) 124, 423, 508, 652, 855
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 3 cut(s) 57, 510, 843
NmuCI GTSAC 2 cut(s) 548, 643
PceI AGGCCT 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 584
PcsI WCGNNNNNNNCGW 4 cut(s) 192, 204, 356, 578
PfeI GAWTC 2 cut(s) 503, 541
PinAI ACCGGT 1 cut(s) 660
PkrI GCNGC 4 cut(s) 202, 354, 564, 675
PluTI GGCGCC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 682
PmlI CACGTG 1 cut(s) 682
Ppu21I YACGTR 2 cut(s) 682, 828
PspCI CACGTG 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 57, 510, 843
PspPI GGNCC 1 cut(s) 658
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 3 cut(s) 665, 737, 818
RsaNI GTAC 3 cut(s) 664, 736, 817
SalI GTCGAC 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 2 cut(s) 489, 534
SatI GCNGC 4 cut(s) 201, 353, 563, 674
Sau3AI GATC 5 cut(s) 124, 423, 508, 652, 855
Sau96I GGNCC 1 cut(s) 658
SfaNI GCATC 1 cut(s) 622
SfoI GGCGCC 1 cut(s) 57
SgrAI CRCCGGYG 1 cut(s) 847
SinI GGWCC 1 cut(s) 658
SnaBI TACGTA 1 cut(s) 828
Sse9I AATT 3 cut(s) 29, 315, 444
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 6 cut(s) 144, 353, 368, 674, 806, 845
SspDI GGCGCC 1 cut(s) 55
StuI AGGCCT 1 cut(s) 263
StyI CCWWGG 1 cut(s) 51
TaiI ACGT 7 cut(s) 282, 296, 405, 555, 635, 684, 830
TaqI TCGA 4 cut(s) 359, 426, 448, 789
TasI AATT 3 cut(s) 29, 315, 444
TatI WGTACW 1 cut(s) 735
TauI GCSGC 2 cut(s) 355, 676
TfiI GAWTC 2 cut(s) 503, 541
Tru1I TTAA 2 cut(s) 489, 534
Tru9I TTAA 2 cut(s) 489, 534
TseFI GTSAC 2 cut(s) 548, 643
TseI GCWGC 2 cut(s) 200, 562
Tsp45I GTSAC 2 cut(s) 548, 643
TspDTI ATGAA 2 cut(s) 476, 613
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.