Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

61131049 .. 61131793

Gene Structure 745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33402

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTCTGTACATCCACTATACTATTCAATCATGTTTTCTTTGCTTTTGTGGTCCTCTGCAAGGTAGCACCAGCTGAACTTGAAGGCCTATTTCCTGATGCTGAAGTCCCTGTTGCATATGTTGTGCGCTCGCCAAACAGTTCACTGACCGAAGAAGATATCAAGAGTTTTATAGCGAGTCAGGTTGCATCTTTTAAAAGACTGCGACAAGTGACGTTCATAAACACTGTCCCTAAGTCGGCATCAGGAAAAATCCTCAGAAGAGAGCTCATCGAGAAAGTACGTTCCAAAATAGAGGTATATATTCCTCATTCTCATGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

108

Amino Acids

12.11

Weight (kDa)

8.91

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	32 - 84	2.2e-09	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	10, 282
AfiI	CCNNNNNNNGG	2 cut(s)	61, 238
AgsI	TTSAA	2 cut(s)	28, 83
AluBI	AGCT	2 cut(s)	74, 268
AluI	AGCT	2 cut(s)	74, 268
Alw21I	GWGCWC	1 cut(s)	270
AoxI	GGCC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmsI	GCATC	3 cut(s)	88, 197, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 238
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	61, 238
BseMII	CTCAG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	92, 215
BslI	CCNNNNNNNGG	2 cut(s)	61, 238
BsmFI	GGGAC	2 cut(s)	92, 215
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	8
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	140, 229
Bst6I	CTCTTC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	234, 257
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	143, 225
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	9, 281
CviAII	CATG	2 cut(s)	32, 317
CviJI	RGCY	3 cut(s)	74, 87, 268
CviKI_1	RGCY	3 cut(s)	74, 87, 268
CviQI	GTAC	2 cut(s)	9, 281
DdeI	CTNAG	2 cut(s)	234, 257
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	2 cut(s)	35, 320
FaiI	YATR	9 cut(s)	20, 33, 118, 120, 173, 221, 301, 303, 318
FaqI	GGGAC	2 cut(s)	92, 215
FatI	CATG	2 cut(s)	31, 316
FauNDI	CATATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	270
GlaI	GCGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	35, 320
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	4 cut(s)	95, 163, 246, 274
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	140, 229
HpyCH4IV	ACGT	2 cut(s)	215, 283
HpyCH4V	TGCA	3 cut(s)	60, 116, 188
HpyF3I	CTNAG	2 cut(s)	234, 257
HpySE526I	ACGT	2 cut(s)	215, 283
Hsp92II	CATG	2 cut(s)	35, 320
HspAI	GCGC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	84, 108, 123, 167, 231
LweI	GCATC	3 cut(s)	88, 197, 251
MaeII	ACGT	2 cut(s)	215, 283
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	164, 167, 273
MhlI	GDGCHC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	65, 266, 289, 318
MseI	TTAA	2 cut(s)	195, 325
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	118
NlaIII	CATG	2 cut(s)	35, 320
NmuCI	GTSAC	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	87
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	10, 282
RsaNI	GTAC	2 cut(s)	9, 281
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	195, 325
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	66, 76, 186, 218, 270, 286, 300
SfaNI	GCATC	3 cut(s)	88, 197, 251
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	315
SseBI	AGGCCT	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	140, 229
TaiI	ACGT	2 cut(s)	218, 286
TaqI	TCGA	1 cut(s)	273
TaqII	GACCGA	1 cut(s)	164
TatI	WGTACW	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	195, 325
Tru9I	TTAA	2 cut(s)	195, 325
TscAI	CASTG	2 cut(s)	150, 232
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	208
TspRI	CASTG	2 cut(s)	150, 232
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.