Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

55624852 .. 55629258

Gene Structure 4407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG411700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGAAATCTGGGTATGGCCGTGATGGAGTTTTCAGGTCACTCAGGCCACCTCTGGTACTACCCAGAGACCCAAATCTCACCATGGTCTCTTTCCTCTTCAAAAACTCTTCTTCATATCCACACAGACCTGCCCTCATTGATGCCGAGTCCTCTGAAACCCTGTCCTTCTCCCAGCTCAAGTCAACGGTCATCAAGGTTGCACATGGCTTAATCCATCTGGGTATTAAGAAAAACGACGTGGTTCTGATTTTCGCTCCCAATTCAATCCAGTTTCCTATTTGTTTCCTTGGAATTATTGCAATTGGTGCCATTGCAACCACTTCAAATCCTCTCTACACTGTTTCAGAGCTTTCCAAGCAAGTGAAGGATTCCAATCCAAAACTGGTTATAACTGTGCCTGAATTGTGGGAAAAGGTGAAGGGTTTAAATCTTCCAGCAGTGATTCTAGGACCAAAAGGTTCATCTTCCCAAATTGAATCCAGCTCAAGAATTGTGGGTTTTCATGATTTGGTTCAGTTATCCGGGCCTGTCTCGGATTTCCCTAGTGTAAATGTTAAGCAGACTGATACTGCTGCGCTGTTGTACTCTTCGGGTACAACAGGCCTCAGCAAAGGTGTGATTCTGACTCATGGGAATTTCATTGCTTCCTCTCTGATGATCACACAAGATCAAGAAGTGGCTGGGGAGATGCATAATGTGTATCTTTGTGTGTTGCCAATGTTCCATGTGTTTGGATTGGCAGTCATCACTTACGCGCAGCTGCGAAAGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAGGTTTTGATGACTGTTGAGAAGTTCAAGGTCACCCATTTGTGGCTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAGTCTTTCATCTTTGAAGCATATTGGGTCTGGTGCAGCTCCTCTGGGGAAAGAGTTAATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTTCTCAGGGTTATGGTATGACAGAAACCTGTGGAATTGTTTCAGTTGAGAATACACTAGTAGGACCTCGACATAGTGGTTCAGCTGGCACTCTTGTTTCTGGAGTTGAATCTCAGATAGTCAGTGTAGATACATTGAAACCTCTCCCGCCAAAGCAGTTGGGGGAGATATGGGTTAGGGGGCCTAATATGATGATGGGTAAGTGCGATTTCAATTTGCTTGTTGTTAATCTTAGAGAAAATAAAGAACAATTATTCTGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

422

Amino Acids

45.66

Weight (kDa)

8.97

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	35 - 401	4.8e-86	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	1 cut(s)	758
AciI	CCGC	1 cut(s)	1151
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	637
AfaI	GTAC	4 cut(s)	60, 587, 598, 908
AfiI	CCNNNNNNNGG	1 cut(s)	852
AhlI	ACTAGT	1 cut(s)	1060
AjiI	CACGTC	1 cut(s)	241
AluBI	AGCT	6 cut(s)	178, 352, 486, 763, 947, 1088
AluI	AGCT	6 cut(s)	178, 352, 486, 763, 947, 1088
Alw26I	GTCTC	3 cut(s)	63, 94, 538
AoxI	GGCC	5 cut(s)	19, 47, 527, 604, 1184
ApeKI	GCWGC	4 cut(s)	575, 760, 763, 944
ApoI	RAATTY	1 cut(s)	637
Asp700I	GAANNNNTTC	1 cut(s)	1042
AspLEI	GCGC	2 cut(s)	580, 760
AspS9I	GGNCC	4 cut(s)	452, 527, 1067, 1184
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	3 cut(s)	73, 430, 835
AvaII	GGWCC	2 cut(s)	452, 1067
BanI	GGYRCC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	562, 750, 772, 956
BccI	CCATC	3 cut(s)	20, 225, 1192
BceAI	ACGGC	1 cut(s)	6
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	3 cut(s)	63, 94, 538
BcuI	ACTAGT	1 cut(s)	1060
BfaI	CTAG	3 cut(s)	449, 546, 1061
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	4 cut(s)	576, 761, 764, 945
BlsI	GCNGC	4 cut(s)	577, 762, 765, 946
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	2 cut(s)	452, 1067
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	4 cut(s)	452, 527, 1067, 1184
BmiI	GGNNCC	2 cut(s)	310, 1185
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	133, 681
BpmI	CTGGAG	2 cut(s)	827, 1125
Bpu10I	CCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	3 cut(s)	164, 472, 978
BpuMI	CCSGG	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	63, 94
BsaJI	CCNNGG	2 cut(s)	84, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	852
Bse1I	ACTGG	2 cut(s)	271, 390
Bse3DI	GCAATG	2 cut(s)	312, 642
Bse8I	GATNNNNATC	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	84, 289
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	852
BseMI	GCAATG	2 cut(s)	312, 642
BseMII	CTCAG	4 cut(s)	58, 622, 1022, 1130
BseNI	ACTGG	2 cut(s)	271, 390
BseRI	GAGGAG	2 cut(s)	939, 986
BseXI	GCAGC	4 cut(s)	562, 750, 772, 956
BseYI	CCCAGC	2 cut(s)	174, 683
BsgI	GTGCAG	2 cut(s)	963, 1246
Bsh1236I	CGCG	1 cut(s)	758
BshFI	GGCC	5 cut(s)	21, 49, 529, 606, 1186
BshNI	GGYRCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	852
BsmAI	GTCTC	3 cut(s)	63, 94, 538
BsnI	GGCC	5 cut(s)	21, 49, 529, 606, 1186
Bso31I	GGTCTC	2 cut(s)	63, 94
Bsp143I	GATC	2 cut(s)	660, 670
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	1151
BspANI	GGCC	5 cut(s)	21, 49, 529, 606, 1186
BspCNI	CTCAG	4 cut(s)	57, 621, 1021, 1129
BspFNI	CGCG	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	310, 1185
BspMI	ACCTGC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	2 cut(s)	63, 94
BsrDI	GCAATG	2 cut(s)	312, 642
BsrI	ACTGG	2 cut(s)	271, 390
BssECI	CCNNGG	2 cut(s)	84, 289
BssMI	GATC	2 cut(s)	660, 670
BssT1I	CCWWGG	2 cut(s)	84, 289
Bst4CI	ACNGT	6 cut(s)	190, 343, 397, 826, 893, 911
Bst6I	CTCTTC	3 cut(s)	104, 115, 595
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	1090
BstDEI	CTNAG	6 cut(s)	44, 608, 1008, 1116, 1235, 1266
BstDSI	CCRYGG	1 cut(s)	84
BstEII	GGTNACC	1 cut(s)	841
BstFNI	CGCG	1 cut(s)	758
BstHHI	GCGC	2 cut(s)	580, 760
BstKTI	GATC	2 cut(s)	663, 673
BstMAI	GTCTC	3 cut(s)	63, 94, 538
BstMBI	GATC	2 cut(s)	660, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 358
BstPI	GGTNACC	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	524
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	4 cut(s)	562, 750, 772, 956
BstXI	CCANNNNNNTGG	1 cut(s)	734
BsuRI	GGCC	5 cut(s)	21, 49, 529, 606, 1186
BtgI	CCRYGG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	4 cut(s)	339, 447, 898, 1132
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	1090
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	2 cut(s)	580, 760
Cfr13I	GGNCC	4 cut(s)	452, 527, 1067, 1184
Csp6I	GTAC	4 cut(s)	59, 586, 597, 907
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviAII	CATG	5 cut(s)	85, 206, 506, 632, 728
CviQI	GTAC	4 cut(s)	59, 586, 597, 907
DdeI	CTNAG	6 cut(s)	44, 608, 1008, 1116, 1235, 1266
DpnI	GATC	2 cut(s)	662, 672
DpnII	GATC	2 cut(s)	660, 670
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	3 cut(s)	104, 115, 595
EarI	CTCTTC	3 cut(s)	104, 115, 595
Eco130I	CCWWGG	2 cut(s)	84, 289
Eco147I	AGGCCT	1 cut(s)	606
Eco31I	GGTCTC	2 cut(s)	63, 94
Eco47I	GGWCC	2 cut(s)	452, 1067
Eco91I	GGTNACC	1 cut(s)	841
EcoO109I	RGGNCCY	2 cut(s)	1067, 1184
EcoO65I	GGTNACC	1 cut(s)	841
EcoT14I	CCWWGG	2 cut(s)	84, 289
EcoT22I	ATGCAT	1 cut(s)	696
ErhI	CCWWGG	2 cut(s)	84, 289
FaeI	CATG	5 cut(s)	88, 209, 509, 635, 731
FatI	CATG	5 cut(s)	84, 205, 505, 631, 727
FauI	CCCGC	1 cut(s)	1158
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	4 cut(s)	576, 761, 764, 945
Fsp4HI	GCNGC	4 cut(s)	576, 761, 764, 945
FspBI	CTAG	3 cut(s)	449, 546, 1061
GlaI	GCGC	2 cut(s)	579, 759
GluI	GCNGC	4 cut(s)	576, 761, 764, 945
GsaI	CCCAGC	2 cut(s)	178, 687
GsuI	CTGGAG	2 cut(s)	827, 1125
HaeIII	GGCC	5 cut(s)	21, 49, 529, 606, 1186
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	2 cut(s)	580, 760
Hin1II	CATG	5 cut(s)	88, 209, 509, 635, 731
Hin6I	GCGC	2 cut(s)	578, 758
HinP1I	GCGC	2 cut(s)	578, 758
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	8 cut(s)	149, 371, 445, 479, 622, 628, 798, 1112
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	3 cut(s)	73, 430, 835
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	7 cut(s)	157, 249, 349, 538, 627, 657, 1119
Hpy188III	TCNNGA	6 cut(s)	489, 506, 674, 795, 806, 1104
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	178, 361, 415, 805
HpyCH4III	ACNGT	6 cut(s)	190, 343, 397, 826, 893, 911
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	7 cut(s)	203, 302, 317, 694, 944, 980, 1263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 358
HpyF3I	CTNAG	6 cut(s)	44, 608, 1008, 1116, 1235, 1266
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	88, 209, 509, 635, 731
HspAI	GCGC	2 cut(s)	578, 758
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	660, 670
LmnI	GCTCC	2 cut(s)	262, 952
Lsp1109I	GCAGC	4 cut(s)	562, 750, 772, 956
LweI	GCATC	2 cut(s)	133, 681
MaeI	CTAG	3 cut(s)	449, 546, 1061
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	39, 841
MalI	GATC	2 cut(s)	662, 672
MboI	GATC	2 cut(s)	660, 670
MboII	GAAGA	6 cut(s)	91, 102, 105, 425, 459, 582
MfeI	CAATTG	1 cut(s)	303
MlyI	GAGTC	2 cut(s)	158, 622
Mph1103I	ATGCAT	1 cut(s)	696
MroXI	GAANNNNTTC	1 cut(s)	1042
MseI	TTAA	7 cut(s)	212, 228, 428, 558, 900, 965, 1230
MspA1I	CMGCKG	2 cut(s)	763, 1088
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	526
MunI	CAATTG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	2 cut(s)	308, 358
NciI	CCSGG	1 cut(s)	526
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	660, 670
NlaIII	CATG	5 cut(s)	88, 209, 509, 635, 731
NlaIV	GGNNCC	2 cut(s)	310, 1185
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	39, 841
NsiI	ATGCAT	1 cut(s)	696
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	606
PdmI	GAANNNNTTC	1 cut(s)	1042
PfeI	GAWTC	6 cut(s)	371, 445, 479, 622, 798, 1112
PkrI	GCNGC	4 cut(s)	577, 762, 765, 946
PleI	GAGTC	2 cut(s)	157, 622
PpsI	GAGTC	2 cut(s)	157, 622
PpuMI	RGGWCCY	1 cut(s)	1067
PsiI	TTATAA	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	1067
PspEI	GGTNACC	1 cut(s)	841
PspFI	CCCAGC	2 cut(s)	174, 683
PspN4I	GGNNCC	2 cut(s)	310, 1185
PspPI	GGNCC	4 cut(s)	452, 527, 1067, 1184
PspPPI	RGGWCCY	1 cut(s)	1067
PvuII	CAGCTG	2 cut(s)	763, 1088
RsaI	GTAC	4 cut(s)	60, 587, 598, 908
RsaNI	GTAC	4 cut(s)	59, 586, 597, 907
SaqAI	TTAA	7 cut(s)	212, 228, 428, 558, 900, 965, 1230
SatI	GCNGC	4 cut(s)	576, 761, 764, 945
Sau3AI	GATC	2 cut(s)	660, 670
Sau96I	GGNCC	4 cut(s)	452, 527, 1067, 1184
SchI	GAGTC	2 cut(s)	158, 622
ScrFI	CCNGG	1 cut(s)	526
SfaNI	GCATC	2 cut(s)	133, 681
SinI	GGWCC	2 cut(s)	452, 1067
SmlI	CTYRAG	3 cut(s)	179, 487, 993
SmoI	CTYRAG	3 cut(s)	179, 487, 993
SpeI	ACTAGT	1 cut(s)	1060
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	1 cut(s)	1151
SspMI	CTAG	3 cut(s)	449, 546, 1061
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	2 cut(s)	84, 289
TaaI	ACNGT	6 cut(s)	190, 343, 397, 826, 893, 911
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	788, 1072
TatI	WGTACW	2 cut(s)	585, 906
TfiI	GAWTC	6 cut(s)	371, 445, 479, 622, 798, 1112
Tru1I	TTAA	7 cut(s)	212, 228, 428, 558, 900, 965, 1230
Tru9I	TTAA	7 cut(s)	212, 228, 428, 558, 900, 965, 1230
TscAI	CASTG	4 cut(s)	346, 447, 898, 1132
TseFI	GTSAC	2 cut(s)	39, 841
TseI	GCWGC	4 cut(s)	575, 760, 763, 944
Tsp45I	GTSAC	2 cut(s)	39, 841
TspDTI	ATGAA	5 cut(s)	105, 453, 494, 631, 906
TspRI	CASTG	4 cut(s)	346, 447, 898, 1132
VpaK11BI	GGWCC	2 cut(s)	452, 1067
XapI	RAATTY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	2 cut(s)	382, 802
XmnI	GAANNNNTTC	1 cut(s)	1042
XspI	CTAG	3 cut(s)	449, 546, 1061
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.