Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

28290876 .. 28332173

Gene Structure 41298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGGAATTTCATTGCTTCCTCTCTGATGATCACACAAGATCAAGAAGTGGCTGGAGAGATGCACCATGTGTTTCTCTGTGTGTTGCCAATGTTCCATATGTTTGGATTGGCCGTCATCACTTACGCGCAGCTGCGAAAGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAGATTTTGATGATTGTTGAGAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAATCTTTCATCTTTGAAGCATATTGCGTCTGGTGCAGCTCCTCTGGGGAAAGAGTTGATGGTGGAGTGTGCAAAAATTATTCCTCAAAGTGTAGTTATTCAGGGTTATGGTATGACAGAAACCTGTGGAATTATTTCAATTGAGAATTCACTAGTAGGACCTCGACATAGTGGTTCAGCTGGCACTCTTGTTTCTGGAGTTGAATCTCTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

8.81

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	5 - 161	3.6e-29	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	7, 424
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	206, 278
AfiI	CCNNNNNNNGG	2 cut(s)	222, 223
AgsI	TTSAA	4 cut(s)	172, 295, 417, 482
AhlI	ACTAGT	1 cut(s)	430
AluBI	AGCT	3 cut(s)	133, 317, 458
AluI	AGCT	3 cut(s)	133, 317, 458
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	130, 133, 314
ApoI	RAATTY	2 cut(s)	7, 424
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	120, 142, 326
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	30
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	1 cut(s)	431
BisI	GCNGC	3 cut(s)	131, 134, 315
BlsI	GCNGC	3 cut(s)	132, 135, 316
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	3 cut(s)	75, 197, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 223
Bse3DI	GCAATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	222, 223
BseMI	GCAATG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	120, 142, 326
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	222, 223
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	30, 40
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	12
BssMI	GATC	2 cut(s)	30, 40
Bst4CI	ACNGT	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	488
BstEII	GGTNACC	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	33, 43
BstMBI	GATC	2 cut(s)	30, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	120, 142, 326
BstXI	CCANNNNNNTGG	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	460
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	205, 277
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	5 cut(s)	53, 113, 133, 317, 458
CviKI_1	RGCY	5 cut(s)	53, 113, 133, 317, 458
CviQI	GTAC	2 cut(s)	205, 277
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	2 cut(s)	32, 42
DpnII	GATC	2 cut(s)	30, 40
DraIII	CACNNNGTG	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	424
FaeI	CATG	1 cut(s)	71
FaiI	YATR	8 cut(s)	69, 99, 101, 242, 300, 387, 392, 447
FatI	CATG	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	131, 134, 315
Fsp4HI	GCNGC	3 cut(s)	131, 134, 315
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	131, 134, 315
GsuI	CTGGAG	3 cut(s)	75, 197, 495
HaeIII	GGCC	1 cut(s)	113
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	168, 482
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	27, 491
Hpy188III	TCNNGA	4 cut(s)	44, 165, 176, 474
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	64, 314, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	488
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 40
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	9 cut(s)	39, 161, 178, 294, 308, 365, 415, 444, 459
Lsp1109I	GCAGC	3 cut(s)	120, 142, 326
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	32, 42
MboI	GATC	2 cut(s)	30, 40
MboII	GAAGA	1 cut(s)	193
MfeI	CAATTG	1 cut(s)	417
MluCI	AATT	5 cut(s)	7, 354, 408, 417, 424
MnlI	CCTC	5 cut(s)	31, 243, 330, 372, 450
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	133, 458
MunI	CAATTG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	2 cut(s)	30, 40
NlaIII	CATG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	168, 482
PkrI	GCNGC	3 cut(s)	132, 135, 316
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
PspEI	GGTNACC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PvuII	CAGCTG	2 cut(s)	133, 458
RsaI	GTAC	2 cut(s)	206, 278
RsaNI	GTAC	2 cut(s)	205, 277
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	131, 134, 315
Sau3AI	GATC	2 cut(s)	30, 40
Sau96I	GGNCC	1 cut(s)	437
SetI	ASST	6 cut(s)	135, 213, 319, 404, 442, 460
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	5 cut(s)	7, 354, 408, 417, 424
SspMI	CTAG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	158, 442
TasI	AATT	5 cut(s)	7, 354, 408, 417, 424
TatI	WGTACW	2 cut(s)	204, 276
TfiI	GAWTC	2 cut(s)	168, 482
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	130, 133, 314
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	7, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.