Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

61076433 .. 61079087

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCACCGTTTGTTTCTCTGTGTGTTGCCAATGTTCCATGTCTTTGGATTGGCCATCGTCACTTACGTGCAGCTGCGGAAGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAGATTTTGATGACTGTTGAGAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAACCTTTCATCTTTGAAGCATATTGGGTCCGGTGCAGCTCATCTGGGGAAAGGGTTGATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTATGGTATGACAGAAACCTGTGGAATTGTTTCAGTTGAGAATGCACTAGTAGGACCTCAACATAGTGGTTCAGCTGGAATTCTTGCTTCCGGAGTTGAATCTCAGATAGTCAGTGTAGATACACTCAAACCTCTCCCTCCAAAGCAGCTGGGGGAGATATGGGTTACGGGGCCTAATACGATGATAGGTTATTTTAACAACCCACAGGCCACCCAGCTAACTTTAGATAAAAATGGTTGGGTACATACTGGAAATCTTGGATACTTTGATGGAGGTGGCCAACTTTTTGTGGTTGACCGAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

210

Amino Acids

22.74

Weight (kDa)

8.96

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	5 - 173	8.8e-38	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	413
AciI	CCGC	1 cut(s)	76
AcoI	YGGCCR	2 cut(s)	51, 601
AcsI	RAATTY	1 cut(s)	402
AfaI	GTAC	3 cut(s)	146, 218, 567
AfiI	CCNNNNNNNGG	2 cut(s)	162, 163
AgsI	TTSAA	3 cut(s)	112, 235, 422
AhlI	ACTAGT	1 cut(s)	370
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	5 cut(s)	73, 257, 398, 472, 541
AluI	AGCT	5 cut(s)	73, 257, 398, 472, 541
Aor13HI	TCCGGA	1 cut(s)	413
AoxI	GGCC	4 cut(s)	51, 494, 531, 601
ApeKI	GCWGC	4 cut(s)	70, 73, 254, 469
ApoI	RAATTY	1 cut(s)	402
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	246, 377, 494
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	246, 377
BalI	TGGCCA	2 cut(s)	53, 603
BbvI	GCAGC	4 cut(s)	60, 82, 266, 481
BccI	CCATC	3 cut(s)	62, 271, 587
BciVI	GTATCC	1 cut(s)	578
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	4 cut(s)	71, 74, 255, 470
BlsI	GCNGC	4 cut(s)	72, 75, 256, 471
Bme18I	GGWCC	2 cut(s)	246, 377
BmgT120I	GGNCC	3 cut(s)	246, 377, 494
BmiI	GGNNCC	2 cut(s)	247, 495
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	67
BsaWI	WCCGGW	2 cut(s)	248, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 163
Bse1I	ACTGG	1 cut(s)	577
BseAI	TCCGGA	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	162, 163
BseMII	CTCAG	2 cut(s)	332, 440
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	60, 82, 266, 481
BseYI	CCCAGC	2 cut(s)	472, 537
BsgI	GTGCAG	2 cut(s)	89, 273
BshFI	GGCC	4 cut(s)	53, 496, 533, 603
BsiSI	CCGG	2 cut(s)	249, 414
BslI	CCNNNNNNNGG	2 cut(s)	162, 163
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	53, 496, 533, 603
Bsp13I	TCCGGA	1 cut(s)	413
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	4 cut(s)	53, 496, 533, 603
BspCNI	CTCAG	2 cut(s)	331, 439
BspEI	TCCGGA	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	247, 495
BsrI	ACTGG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	8, 136, 203
BstBAI	YACGTR	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	318, 426
BstEII	GGTNACC	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	60, 82, 266, 481
BstXI	CCANNNNNNTGG	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	4 cut(s)	53, 496, 533, 603
BtsIMutI	CAGTG	2 cut(s)	208, 442
Cfr13I	GGNCC	3 cut(s)	246, 377, 494
Csp6I	GTAC	3 cut(s)	145, 217, 566
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	9 cut(s)	53, 73, 257, 398, 472, 496, 533, 541, 603
CviKI_1	RGCY	9 cut(s)	53, 73, 257, 398, 472, 496, 533, 541, 603
CviQI	GTAC	3 cut(s)	145, 217, 566
DdeI	CTNAG	2 cut(s)	318, 426
EaeI	YGGCCR	2 cut(s)	51, 601
Eco47I	GGWCC	2 cut(s)	246, 377
Eco91I	GGTNACC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	377, 494
EcoO65I	GGTNACC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	402
FaeI	CATG	1 cut(s)	41
FaiI	YATR	8 cut(s)	39, 182, 240, 327, 332, 387, 484, 570
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	71, 74, 255, 470
Fsp4HI	GCNGC	4 cut(s)	71, 74, 255, 470
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	4 cut(s)	71, 74, 255, 470
GsaI	CCCAGC	2 cut(s)	476, 541
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	4 cut(s)	53, 496, 533, 603
HapII	CCGG	2 cut(s)	249, 414
Hin1II	CATG	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	108, 422
HpaII	CCGG	2 cut(s)	249, 414
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	3 cut(s)	105, 116, 414
Hpy8I	GTNNAC	1 cut(s)	619
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	8, 136, 203
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	5 cut(s)	4, 70, 254, 290, 368
HpyF3I	CTNAG	2 cut(s)	318, 426
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	413
Lsp1109I	GCAGC	4 cut(s)	60, 82, 266, 481
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	58, 151, 487
MboII	GAAGA	1 cut(s)	133
MlsI	TGGCCA	2 cut(s)	53, 603
MluCI	AATT	5 cut(s)	294, 348, 402, 624, 628
MluNI	TGGCCA	2 cut(s)	53, 603
MnlI	CCTC	7 cut(s)	183, 274, 312, 390, 465, 471, 590
Mox20I	TGGCCA	2 cut(s)	53, 603
MroI	TCCGGA	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	2 cut(s)	53, 603
MseI	TTAA	4 cut(s)	210, 519, 627, 631
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	2 cut(s)	53, 603
MspA1I	CMGCKG	3 cut(s)	73, 398, 472
MspI	CCGG	2 cut(s)	249, 414
Mva1269I	GAATGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	2 cut(s)	247, 495
NmuCI	GTSAC	2 cut(s)	58, 151
OliI	CACNNNNGTG	1 cut(s)	65
PacI	TTAATTAA	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	108, 422
PkrI	GCNGC	4 cut(s)	72, 75, 256, 471
Ppu21I	YACGTR	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	151
PspFI	CCCAGC	2 cut(s)	472, 537
PspN4I	GGNNCC	2 cut(s)	247, 495
PspPI	GGNCC	3 cut(s)	246, 377, 494
PspPPI	RGGWCCY	1 cut(s)	377
PvuII	CAGCTG	3 cut(s)	73, 398, 472
RsaI	GTAC	3 cut(s)	146, 218, 567
RsaNI	GTAC	3 cut(s)	145, 217, 566
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	210, 519, 627, 631
SatI	GCNGC	4 cut(s)	71, 74, 255, 470
Sau96I	GGNCC	3 cut(s)	246, 377, 494
SinI	GGWCC	2 cut(s)	246, 377
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	370
Sse9I	AATT	5 cut(s)	294, 348, 402, 624, 628
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	8, 136, 203
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	98
TasI	AATT	5 cut(s)	294, 348, 402, 624, 628
TatI	WGTACW	2 cut(s)	144, 216
TfiI	GAWTC	2 cut(s)	108, 422
Tru1I	TTAA	4 cut(s)	210, 519, 627, 631
Tru9I	TTAA	4 cut(s)	210, 519, 627, 631
TscAI	CASTG	2 cut(s)	208, 442
TseFI	GTSAC	2 cut(s)	58, 151
TseI	GCWGC	4 cut(s)	70, 73, 254, 469
Tsp45I	GTSAC	2 cut(s)	58, 151
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	208, 442
VpaK11BI	GGWCC	2 cut(s)	246, 377
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.