Rroxscaffold_7G00210330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000517
Physical Location & Seq
Forward (+)
60601949 .. 60607816
5868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210330.1

Sequence Viewer

Length: 378 bp
ATGGATGAACTAAATCTGTCCAATCTAAACCGTACTAGCTTTAAGTACCAGTCAAAAAGCAAAAGGCCAAAAATCATGGCACACCATTCATTTTGTCATCCAATGCCATTTTACAAAACCATTTCTTCCACTTTCACTCTCTCTTCAGTTCTGGTCTTCTCCGGTTCTGCCATGGTCGCTTTCCTCTTCAAAAACTCTTCTTCTTATACACACAAACCTGCCCTCATTGATGCCGAGCCCTGCGAAACCCCCGTCCTTCTCCCGGCTCAAGTCAACGGTCATCAAGGTTACCCATGGCTTAATCCATCGGTTGGTGGTCACTTGTTGCCAAAAGGAAAGGGTGTAGGAACCCAAAGCATTACCCTTCGGTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.79

Weight (kDa)

9.7

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 34, 47
AfiI CCNNNNNNNGG 2 cut(s) 262, 311
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AoxI GGCC 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AsuC2I CCSGG 1 cut(s) 263
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 148
BccI CCATC 1 cut(s) 313
BcnI CCSGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 171, 293
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 311
Bse1I ACTGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 171, 293
BseGI GGATG 2 cut(s) 10, 97
BseLI CCNNNNNNNGG 2 cut(s) 262, 311
BseNI ACTGG 1 cut(s) 49
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 2 cut(s) 162, 263
BslI CCNNNNNNNGG 2 cut(s) 262, 311
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 240
Bsp19I CCATGG 2 cut(s) 171, 293
BspANI GGCC 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 171, 293
BssT1I CCWWGG 2 cut(s) 171, 293
Bst4CI ACNGT 2 cut(s) 32, 278
Bst6I CTCTTC 3 cut(s) 148, 191, 202
BstDSI CCRYGG 2 cut(s) 171, 293
BstEII GGTNACC 1 cut(s) 287
BstF5I GGATG 2 cut(s) 10, 97
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 2 cut(s) 171, 293
BtsCI GGATG 2 cut(s) 10, 97
BveI ACCTGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 33, 46
CviAII CATG 3 cut(s) 76, 172, 294
CviJI RGCY 5 cut(s) 39, 67, 238, 266, 298
CviKI_1 RGCY 5 cut(s) 39, 67, 238, 266, 298
CviQI GTAC 2 cut(s) 33, 46
Eam1104I CTCTTC 3 cut(s) 148, 191, 202
EarI CTCTTC 3 cut(s) 148, 191, 202
Eco130I CCWWGG 2 cut(s) 171, 293
Eco24I GRGCYC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 171, 293
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 2 cut(s) 171, 293
FaeI CATG 3 cut(s) 79, 175, 297
FaiI YATR 5 cut(s) 77, 173, 207, 295, 376
FatI CATG 3 cut(s) 75, 171, 293
FokI GGATG 2 cut(s) 17, 84
FriOI GRGCYC 1 cut(s) 240
FspBI CTAG 1 cut(s) 36
HaeIII GGCC 1 cut(s) 67
HapII CCGG 2 cut(s) 162, 263
Hin1II CATG 3 cut(s) 79, 175, 297
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HpaII CCGG 2 cut(s) 162, 263
Hpy166II GTNNAC 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 266, 374
HpyCH4III ACNGT 2 cut(s) 32, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 3 cut(s) 79, 175, 297
LpnPI CCDG 6 cut(s) 62, 137, 175, 231, 253, 276
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 287, 317
MboII GAAGA 6 cut(s) 117, 135, 148, 178, 189, 192
MhlI GDGCHC 1 cut(s) 240
MnlI CCTC 2 cut(s) 194, 233
MseI TTAA 2 cut(s) 42, 300
MspI CCGG 2 cut(s) 162, 263
MspR9I CCNGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 2 cut(s) 171, 293
NlaIII CATG 3 cut(s) 79, 175, 297
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 349
RsaI GTAC 2 cut(s) 34, 47
RsaNI GTAC 2 cut(s) 33, 46
SaqAI TTAA 2 cut(s) 42, 300
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 240
SetI ASST 3 cut(s) 41, 220, 289
SfaNI GCATC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 171, 293
TaaI ACNGT 2 cut(s) 32, 278
Tru1I TTAA 2 cut(s) 42, 300
Tru9I TTAA 2 cut(s) 42, 300
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 21, 78, 363
Van91I CCANNNNNTGG 1 cut(s) 311
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.