RchiOBHm_Chr4g0437371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000517
Physical Location & Seq
Forward (+)
60487528 .. 60488592
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40563

Sequence Viewer

Length: 474 bp
ATGAATATTTTAGAACCAGTACTGACGTGTAACTTTTGCCTTGAATATTTTAGAACCAGTACTGGGTTTGCAGTTACTGCTGCTTACTCTCTGCCTAGTCTGGAATCTCCAGGTCTAGAGTTCGAATCCCAGCTCCATCCCGTGGCCAGCAGATTTGAGGGACCTAGGTTAGTTAAAACACCCAATGGTTCATGCGTCTGCGGTGCAGTGATTAGTCTGGCTATGTTGGGATACACTGCATGGGTGTGTGTTGGTTCTATTGACGTCTTCCACTCAAAAAAAAAAAAAAAAATTTACATACGGCAGCCGCACCATCTTACATACGGCTGCCCAATAACAACTGCTAAGGGTCTAATTGGTCAGACCATACCATGTGTTCCTTACGTCTACCGTACGCAAGACGTTAAGTCGGTGTCGGTGGTGTTCACTGACTCAAAACGTTGTACTGCTCATGATATGGGCAGTTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.24

Weight (kDa)

8.8

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccB7I CCANNNNNTGG 1 cut(s) 142
AccI GTMKAC 1 cut(s) 387
AciI CCGC 2 cut(s) 201, 308
AclI AACGTT 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 4 cut(s) 21, 61, 394, 445
AfiI CCNNNNNNNGG 2 cut(s) 63, 142
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 44
AhdI GACNNNNNGTC 1 cut(s) 406
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 80, 304, 327
ApoI RAATTY 1 cut(s) 291
AspA2I CCTAGG 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 161
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 161
AvrII CCTAGG 1 cut(s) 164
BalI TGGCCA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 67, 314, 316
BccI CCATC 2 cut(s) 144, 321
BceAI ACGGC 2 cut(s) 317, 340
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 224
BfaI CTAG 3 cut(s) 96, 116, 165
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 4 cut(s) 81, 305, 308, 328
BlnI CCTAGG 1 cut(s) 164
BlsI GCNGC 4 cut(s) 82, 306, 309, 329
BmcAI AGTACT 2 cut(s) 21, 61
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 161
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 141, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 142
Bse1I ACTGG 3 cut(s) 17, 57, 67
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 141, 164
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 63, 142
BseNI ACTGG 3 cut(s) 17, 57, 67
BseXI GCAGC 3 cut(s) 67, 314, 316
BseYI CCCAGC 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 146
BsiWI CGTACG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 63, 142
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 123
BspACI CCGC 2 cut(s) 201, 308
BspANI GGCC 1 cut(s) 146
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 123
BsrI ACTGG 3 cut(s) 17, 57, 67
BssECI CCNNGG 2 cut(s) 141, 164
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 67, 314, 316
BstV2I GAAGAC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 2 cut(s) 213, 234
BtsIMutI CAGTG 3 cut(s) 213, 234, 426
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 184
Csp6I GTAC 4 cut(s) 20, 60, 393, 444
CviAII CATG 4 cut(s) 192, 240, 372, 452
CviJI RGCY 5 cut(s) 133, 146, 221, 307, 327
CviKI_1 RGCY 5 cut(s) 133, 146, 221, 307, 327
CviQI GTAC 4 cut(s) 20, 60, 393, 444
DdeI CTNAG 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 4 cut(s) 195, 243, 375, 455
FaiI YATR 9 cut(s) 193, 224, 241, 299, 322, 368, 373, 453, 458
FaqI GGGAC 1 cut(s) 174
FatI CATG 4 cut(s) 191, 239, 371, 451
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 81, 305, 308, 328
FokI GGATG 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 81, 305, 308, 328
FspBI CTAG 3 cut(s) 96, 116, 165
GluI GCNGC 4 cut(s) 81, 305, 308, 328
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 146
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 195, 243, 375, 455
HinfI GANTC 3 cut(s) 104, 125, 431
Hpy166II GTNNAC 2 cut(s) 388, 426
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 3 cut(s) 101, 116, 452
Hpy8I GTNNAC 2 cut(s) 388, 426
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 5 cut(s) 26, 264, 384, 402, 439
HpyCH4V TGCA 3 cut(s) 71, 206, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 5 cut(s) 26, 264, 384, 402, 439
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 195, 243, 375, 455
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 9 cut(s) 30, 48, 70, 86, 96, 123, 143, 160, 203
Lsp1109I GCAGC 3 cut(s) 67, 314, 316
MaeI CTAG 3 cut(s) 96, 116, 165
MaeII ACGT 5 cut(s) 26, 264, 384, 402, 439
MaeIII GTNAC 2 cut(s) 29, 73
MboII GAAGA 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 3 cut(s) 291, 354, 469
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 1 cut(s) 151
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 3 cut(s) 174, 405, 468
MslI CAYNNNNRTG 1 cut(s) 244
Msp20I TGGCCA 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 77
NlaIII CATG 4 cut(s) 195, 243, 375, 455
NlaIV GGNNCC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 123
PagI TCATGA 1 cut(s) 451
PfeI GAWTC 2 cut(s) 104, 125
Pfl23II CGTACG 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 142
PkrI GCNGC 4 cut(s) 82, 306, 309, 329
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 161
Psp1406I AACGTT 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 4 cut(s) 21, 61, 394, 445
RsaNI GTAC 4 cut(s) 20, 60, 393, 444
RseI CAYNNNNRTG 1 cut(s) 244
SaqAI TTAA 3 cut(s) 174, 405, 468
SatI GCNGC 4 cut(s) 81, 305, 308, 328
Sau96I GGNCC 1 cut(s) 161
ScaI AGTACT 2 cut(s) 21, 61
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 111
SetI ASST 9 cut(s) 29, 115, 135, 166, 170, 267, 387, 405, 442
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 244
Sse9I AATT 3 cut(s) 291, 354, 469
SsiI CCGC 2 cut(s) 201, 308
SspI AATATT 2 cut(s) 7, 47
SspMI CTAG 3 cut(s) 96, 116, 165
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 5 cut(s) 29, 267, 387, 405, 442
TaqI TCGA 1 cut(s) 123
TasI AATT 3 cut(s) 291, 354, 469
TatI WGTACW 3 cut(s) 19, 59, 443
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 2 cut(s) 104, 125
Tru1I TTAA 3 cut(s) 174, 405, 468
Tru9I TTAA 3 cut(s) 174, 405, 468
TscAI CASTG 3 cut(s) 213, 241, 433
TseI GCWGC 3 cut(s) 80, 304, 327
TspDTI ATGAA 2 cut(s) 17, 180
TspRI CASTG 3 cut(s) 213, 241, 433
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 291
XbaI TCTAGA 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 3 cut(s) 96, 116, 165
ZraI GACGTC 1 cut(s) 265
ZrmI AGTACT 2 cut(s) 21, 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.