Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

33832811 .. 33833674

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAAAATCCTTCAACTCCGAAACCGGAACCTACACGTCCCCTCGGCCTCCGGTCCATTTCCCCGAAGACCCTAACCTCTCGCTTACCTCCTTCCTCTTCCAAACCTCCACCTCTTCCCCTCACAGCCTCGCCCTCGCCGATGCCGACACCGGAGATACCCTAACCTTCCTCCAGCTCAAATCCCTAGTCTGCCGTGTCACACAGAGTGACGTGGCCGCTCTGCTGTACTCGTCAGGCACGACCTGGAAGAGCAAGGGAGTGATTCTAACTCATCGGAACTTCATTACGGCGTCGTTGATGGTGACGGCGGACCAGGACCGTTACGGGGAGCCGAAACATGTGTTTTTGTGTGTTGTTCCCATGTTCCACATAATGGAGCTGTCGCTGGTTCTGTACTCGCAGCTCAGGGTTACTCAGTTGATCGTCGTTCCGCCGGTGATGATTGCGCTGGTGAAGCAGAGTGTTGTTAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

160

Amino Acids

17.53

Weight (kDa)

7.83

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	64 - 146	1.8e-16	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	221
AciI	CCGC	3 cut(s)	219, 311, 434
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	230, 398
AfiI	CCNNNNNNNGG	2 cut(s)	328, 376
AflIII	ACRYGT	2 cut(s)	36, 340
AgsI	TTSAA	1 cut(s)	16
AjiI	CACGTC	2 cut(s)	39, 214
AjnI	CCWGG	2 cut(s)	245, 315
AluBI	AGCT	3 cut(s)	178, 382, 406
AluI	AGCT	3 cut(s)	178, 382, 406
AoxI	GGCC	2 cut(s)	47, 216
ApeKI	GCWGC	1 cut(s)	403
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	55, 313, 319
AsuHPI	GGTGA	3 cut(s)	316, 451, 466
AvaII	GGWCC	3 cut(s)	55, 313, 319
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	3 cut(s)	180, 306, 324
BciT130I	CCWGG	2 cut(s)	247, 317
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	219, 404
BlsI	GCNGC	2 cut(s)	220, 405
Bme1390I	CCNGG	2 cut(s)	247, 317
Bme18I	GGWCC	3 cut(s)	55, 313, 319
BmgBI	CACGTC	2 cut(s)	39, 214
BmgT120I	GGNCC	3 cut(s)	55, 313, 319
BmiI	GGNNCC	2 cut(s)	31, 333
BmrFI	CCNGG	2 cut(s)	247, 317
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	3 cut(s)	26, 52, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 376
Bse118I	RCCGGY	1 cut(s)	436
BseBI	CCWGG	2 cut(s)	247, 317
BseDI	CCNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	328, 376
BseMII	CTCAG	2 cut(s)	421, 431
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	2 cut(s)	49, 218
BsiSI	CCGG	4 cut(s)	27, 53, 153, 437
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	328, 376
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	49, 218
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	3 cut(s)	219, 311, 434
BspANI	GGCC	2 cut(s)	49, 218
BspCNI	CTCAG	2 cut(s)	420, 430
BspLI	GGNNCC	2 cut(s)	31, 333
BspQI	GCTCTTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	247, 317
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	3 cut(s)	104, 121, 245
BstACI	GRCGYC	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	407, 417
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	247, 317
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	245, 315
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	49, 218
BtrI	CACGTC	2 cut(s)	39, 214
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	55, 313, 319
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	229, 397
CviAII	CATG	2 cut(s)	341, 364
CviJI	RGCY	7 cut(s)	49, 129, 178, 218, 334, 382, 406
CviKI_1	RGCY	7 cut(s)	49, 129, 178, 218, 334, 382, 406
CviQI	GTAC	2 cut(s)	229, 397
DdeI	CTNAG	2 cut(s)	407, 417
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
DraIII	CACNNNGTG	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	104, 121, 245
EarI	CTCTTC	3 cut(s)	104, 121, 245
EciI	GGCGGA	2 cut(s)	326, 423
Eco47I	GGWCC	3 cut(s)	55, 313, 319
EcoRII	CCWGG	2 cut(s)	245, 315
FaeI	CATG	2 cut(s)	344, 367
FaiI	YATR	3 cut(s)	342, 365, 374
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	340, 363
Fnu4HI	GCNGC	2 cut(s)	219, 404
Fsp4HI	GCNGC	2 cut(s)	219, 404
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	2 cut(s)	219, 404
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	49, 218
HapII	CCGG	4 cut(s)	27, 53, 153, 437
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	344, 367
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	265
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	4 cut(s)	27, 53, 153, 437
HphI	GGTGA	3 cut(s)	316, 451, 466
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	22, 279
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	2 cut(s)	298, 431
HpyAV	CCTTC	3 cut(s)	22, 103, 178
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	38, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	2 cut(s)	407, 417
HpySE526I	ACGT	2 cut(s)	38, 213
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	344, 367
HspAI	GCGC	1 cut(s)	449
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	423
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	331, 379
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	2 cut(s)	38, 213
MaeIII	GTNAC	5 cut(s)	199, 209, 304, 323, 412
MalI	GATC	1 cut(s)	425
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	1 cut(s)	423
MboII	GAAGA	4 cut(s)	80, 91, 108, 262
MseI	TTAA	1 cut(s)	471
MspI	CCGG	4 cut(s)	27, 53, 153, 437
MspR9I	CCNGG	2 cut(s)	247, 317
MvaI	CCWGG	2 cut(s)	247, 317
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	344, 367
NlaIV	GGNNCC	2 cut(s)	31, 333
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	3 cut(s)	199, 209, 304
NspI	RCATGY	1 cut(s)	344
PciI	ACATGT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 144, 239
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	220, 405
PscI	ACATGT	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	245, 315
PspGI	CCWGG	2 cut(s)	245, 315
PspN4I	GGNNCC	2 cut(s)	31, 333
PspPI	GGNCC	3 cut(s)	55, 313, 319
RsaI	GTAC	2 cut(s)	230, 398
RsaNI	GTAC	2 cut(s)	229, 397
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	219, 404
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	3 cut(s)	55, 313, 319
ScrFI	CCNGG	2 cut(s)	247, 317
SfaNI	GCATC	1 cut(s)	133
SgrAI	CRCCGGYG	1 cut(s)	436
SinI	GGWCC	3 cut(s)	55, 313, 319
SsiI	CCGC	3 cut(s)	219, 311, 434
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	245, 315
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	41, 216
TatI	WGTACW	2 cut(s)	228, 396
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	199, 209, 304
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	3 cut(s)	199, 209, 304
TspDTI	ATGAA	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	55, 313, 319
XceI	RCATGY	1 cut(s)	344
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.