Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

61339020 .. 61341537

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTAGGGGGCCTAATATGATGATAGGTTATTTTAACAACCCACAGGCCACCCAGCTAACTTTAGATAAAAATGGTTGGGTACATACTGGAAATCTTGGATACTTTGATGAAGGTGGCCAACTTTTTGTGGTAGCACCAGCTGAACTTGAAGGCCTGTTAGTTTCTCACCCTGAAATATTAGACGCCATTGTCATCCCATTTCCTGATGCTGAAGCTGGTGAGGTCCCTGTTGCATATGTTGTGCGCTCGCCAAACAGTTCACTGACCGGAGAAGATATCAAGAGTTTTATAGCGAGTCAGGCTGCATCTTTTAAAAGACTGCGACAAGTGACGTTCATAAACACTGCCCCTAAGTCGGCATCAGGAAAAATCCTCAGAAGAGAGCTTATCGAGAAAGTACGTTCCAAAATATCGAACATACTGCACTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

145

Amino Acids

15.82

Weight (kDa)

6.84

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	49 - 124	1.4e-15	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	84, 402
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	4 cut(s)	58, 143, 218, 388
AluI	AGCT	4 cut(s)	58, 143, 218, 388
AoxI	GGCC	4 cut(s)	11, 48, 118, 154
ApeKI	GCWGC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	11, 226
AsuHPI	GGTGA	2 cut(s)	161, 233
AvaII	GGWCC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	1 cut(s)	406
BciVI	GTATCC	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	11, 226
BmiI	GGNNCC	2 cut(s)	12, 228
BmsI	GCATC	3 cut(s)	199, 317, 371
BsaHI	GRCGYC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	4 cut(s)	13, 50, 120, 156
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	13, 50, 120, 156
BspANI	GGCC	4 cut(s)	13, 50, 120, 156
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	12, 228
BsrI	ACTGG	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	354, 377
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	13, 50, 120, 156
BtsCI	GGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	263, 345
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	11, 226
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	83, 401
CviJI	RGCY	9 cut(s)	13, 50, 58, 120, 143, 156, 218, 305, 388
CviKI_1	RGCY	9 cut(s)	13, 50, 58, 120, 143, 156, 218, 305, 388
CviQI	GTAC	2 cut(s)	83, 401
DdeI	CTNAG	2 cut(s)	354, 377
DraI	TTTAAA	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	11, 226
EcoRV	GATATC	1 cut(s)	280
FaiI	YATR	7 cut(s)	20, 87, 238, 240, 293, 341, 422
FaqI	GGGAC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	306
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	4 cut(s)	13, 50, 120, 156
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	161, 233
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	4 cut(s)	206, 283, 366, 394
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	107, 146
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	2 cut(s)	335, 403
HpyCH4V	TGCA	3 cut(s)	236, 308, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	354, 377
HpySE526I	ACGT	2 cut(s)	335, 403
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	3 cut(s)	199, 317, 371
MaeII	ACGT	2 cut(s)	335, 403
MaeIII	GTNAC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	287, 393
MlsI	TGGCCA	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	2 cut(s)	217, 386
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	3 cut(s)	36, 315, 436
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	12, 228
NmuCI	GTSAC	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	12, 228
PspPI	GGNCC	2 cut(s)	11, 226
PspPPI	RGGWCCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	84, 402
RsaNI	GTAC	2 cut(s)	83, 401
SaqAI	TTAA	3 cut(s)	36, 315, 436
SatI	GCNGC	1 cut(s)	306
Sau96I	GGNCC	2 cut(s)	11, 226
SchI	GAGTC	1 cut(s)	307
SetI	ASST	9 cut(s)	31, 60, 118, 145, 220, 228, 338, 390, 406
SfaNI	GCATC	3 cut(s)	199, 317, 371
SinI	GGWCC	1 cut(s)	226
SseBI	AGGCCT	1 cut(s)	156
SspI	AATATT	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	2 cut(s)	338, 406
TaqI	TCGA	2 cut(s)	393, 416
Tru1I	TTAA	3 cut(s)	36, 315, 436
Tru9I	TTAA	3 cut(s)	36, 315, 436
TscAI	CASTG	2 cut(s)	270, 352
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	126, 328
TspRI	CASTG	2 cut(s)	270, 352
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.