Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

49072 .. 49341

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgttccatgtctttggattggccatcatcacttacgtgcagctgcggaagggaaatgctgtgatttcgatgtccagattcaatctggagaagattttgatgactgttgagaagttcaaggtcacccatttgtgggttgtgcctcctattatacttgctctgtcaaaggacagtgtggttaagaagtacaacatttcatctttgaagcatattgggtccggtgcagctcatctggggaaagggctcaggtgtagttgctcaggtacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

89

Amino Acids

9.8

Weight (kDa)

10.1

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	21
AfaI	GTAC	2 cut(s)	188, 265
AfiI	CCNNNNNNNGG	2 cut(s)	132, 133
AgsI	TTSAA	3 cut(s)	82, 118, 205
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	43, 227
AluI	AGCT	2 cut(s)	43, 227
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	3 cut(s)	40, 43, 224
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	30, 52, 236
BccI	CCATC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	41, 44, 225
BlsI	GCNGC	3 cut(s)	42, 45, 226
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	2 cut(s)	245, 259
BsaAI	YACGTR	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 133
BseLI	CCNNNNNNNGG	2 cut(s)	132, 133
BseMII	CTCAG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	30, 52, 236
BsgI	GTGCAG	2 cut(s)	59, 243
BshFI	GGCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	132, 133
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	106, 173
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	245, 259
BstEII	GGTNACC	1 cut(s)	121
BstPI	GGTNACC	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	30, 52, 236
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	187, 264
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	4 cut(s)	23, 43, 227, 244
CviKI_1	RGCY	4 cut(s)	23, 43, 227, 244
CviQI	GTAC	2 cut(s)	187, 264
DdeI	CTNAG	2 cut(s)	245, 259
EaeI	YGGCCR	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 152, 210
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	41, 44, 225
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	41, 44, 225
GluI	GCNGC	3 cut(s)	41, 44, 225
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	115
Hpy188III	TCNNGA	2 cut(s)	75, 86
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	106, 173
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	40, 224
HpyF3I	CTNAG	2 cut(s)	245, 259
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	11
LpnPI	CCDG	6 cut(s)	71, 88, 218, 232, 232, 246
Lsp1109I	GCAGC	3 cut(s)	30, 52, 236
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	2 cut(s)	180, 268
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	219
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	42, 45, 226
Ppu21I	YACGTR	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	188, 265
RsaNI	GTAC	2 cut(s)	187, 264
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	180, 268
SatI	GCNGC	3 cut(s)	41, 44, 225
Sau96I	GGNCC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	39, 45, 123, 229, 251, 265
SgeI	CNNG	9 cut(s)	20, 49, 87, 98, 130, 167, 231, 245, 259
SinI	GGWCC	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	35
SsiI	CCGC	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	106, 173
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	68
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	180, 268
Tru9I	TTAA	2 cut(s)	180, 268
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	40, 43, 224
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.