Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

57526538 .. 57527523

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTGATGGACGTCATTGTGGTTTCTAATACCAGTCAAAAAGCAAAAGGCCAAATCATGGCACACCATTCATTTTGTCGTCCAATGCCATTTTACAAAACCATTTCTTCCACTTGCACTCTCTCTTCAGTTCTGGTCTTCTCCGGTTCTGCCATGGTCTCCTTCCTCTTCAAAAACTCTTCTTCTTATACACACAAACCTGCCCTCATTGATGCCGAGCCCTCCGAAACCCCGTCCTTCTCCCGGCTCAAGTCAACGGTCATCAAGGTTACCCATGGCTTAATCCATCCGGTTGGTGGTCACCGTTGCCAAAAGGAAAGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

108

Amino Acids

11.86

Weight (kDa)

9.72

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	3 cut(s)	58, 243, 296
AgsI	TTSAA	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	16, 293
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	153, 274
BsaWI	WCCGGW	2 cut(s)	143, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 243, 296
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	153, 274
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	58, 243, 296
BseNI	ACTGG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	144, 244, 290
BslI	CCNNNNNNNGG	3 cut(s)	58, 243, 296
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp19I	CCATGG	2 cut(s)	153, 274
BspANI	GGCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	153, 274
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	153, 274
Bst4CI	ACNGT	2 cut(s)	259, 305
Bst6I	CTCTTC	3 cut(s)	130, 173, 184
BstACI	GRCGYC	1 cut(s)	12
BstDSI	CCRYGG	2 cut(s)	153, 274
BstEII	GGTNACC	2 cut(s)	268, 299
BstF5I	GGATG	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	163
BstPI	GGTNACC	2 cut(s)	268, 299
BstSCI	CCNGG	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	2 cut(s)	153, 274
BtsCI	GGATG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	208
CviAII	CATG	3 cut(s)	58, 154, 275
CviJI	RGCY	4 cut(s)	51, 220, 247, 279
CviKI_1	RGCY	4 cut(s)	51, 220, 247, 279
Eam1104I	CTCTTC	3 cut(s)	130, 173, 184
EarI	CTCTTC	3 cut(s)	130, 173, 184
Eco130I	CCWWGG	2 cut(s)	153, 274
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	111
Eco91I	GGTNACC	2 cut(s)	268, 299
EcoO65I	GGTNACC	2 cut(s)	268, 299
EcoT14I	CCWWGG	2 cut(s)	153, 274
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	153, 274
FaeI	CATG	3 cut(s)	61, 157, 278
FaiI	YATR	4 cut(s)	59, 155, 189, 276
FatI	CATG	3 cut(s)	57, 153, 274
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	3 cut(s)	144, 244, 290
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	61, 157, 278
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HpaII	CCGG	3 cut(s)	144, 244, 290
HphI	GGTGA	2 cut(s)	16, 293
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	172, 247
HpyCH4III	ACNGT	2 cut(s)	259, 305
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	61, 157, 278
LpnPI	CCDG	6 cut(s)	46, 119, 157, 213, 257, 303
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	268, 299
MboII	GAAGA	6 cut(s)	99, 117, 130, 160, 171, 174
MhlI	GDGCHC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	176, 215, 232
MseI	TTAA	1 cut(s)	281
MspI	CCGG	3 cut(s)	144, 244, 290
MspR9I	CCNGG	1 cut(s)	244
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	2 cut(s)	153, 274
NlaIII	CATG	3 cut(s)	61, 157, 278
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	58
PspEI	GGTNACC	2 cut(s)	268, 299
SaqAI	TTAA	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	3 cut(s)	15, 202, 270
SfaNI	GCATC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	153, 274
TaaI	ACNGT	2 cut(s)	259, 305
TaiI	ACGT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.