Rw5G035550

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
61610640 .. 61614959
4320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035550.1

Sequence Viewer

Length: 1416 bp
ATGGAGAAATCTGGGTATGGCCGTGATGGAGTTTTCAGGTCACTCAGGCCACCTCTGGTACTACCCAGAGACCCAAATCTCACCATGGTCTCCTTCCTCTTCAAAAACTCTTCTTCTTATCCACACAAACCTGCCCTCATTGATGCCGAGTCCTCTGAAACCCTGTCCTTCTCCCAGCTCAAGTCAACGGTCATCAAGGTTGCACATGGCTTAATCCATCTGGGTATTAAGAAAAACGACGTGGTTCTGATTTTCGCTCCCAATTCAATCCAGTTTCCTATTTGTTTCCTTGGAATTATTGCAATTGGTGCCATTGCAACCACTTCAAATCCTCTCTACACTGTTTCAGAGCTTTCCAAGCAAGTCAAGGATTCCAATCCAAAACTGGTTATAACTGTGCCTGAATTGTGGGAAAAGGTGAAGGGTTTAAATCTTCCAGCAGTGATTCTAGGACTGAAAGGTTCATCTTCCCAAATTGAATCCAGCTCAAGAATTGTGGGTTTTGATGATTTGGTTCAGTTTTCCGGGCCTGTCTCGGATTTCCCTAGTGTAAATGTTAAGCAGACTGATACTGCTGCGCTGTTGTACTCTTCGGGTACAACAGGCCTCAGCAAAGGTGTGATTCTGACTCATGGGAATTTCATTGCTTCCTCTCTGATGATCACACAAGATCAAGAAGTGGCTGGGGAGATGCATAATGTGTATCTTTGTGTGTTGCCAATGTTCCATGTGTTTGGATTGGCCGTCATCACTTACGCGCAGCTGCGAAGGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAGATTTTGATGACTGTTGAGAAGTTCAAGGTCACCCATTTGTGGATTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAGTCTTTCATCTTTGAAGCATATTGGGTCTGGTGCAGCTCCTCTGGGGAAAGAGTTAATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTTCTCAGGGTTATGGTATGACAGAAACCTGTGGAATTGTTTCAGTTGAGAATTCACTAGTAGGACCTCGACATAGTGGTTCAGCTGGCACTCTTGTTTCTGGAGTTGAATCTCAGATAGTCAGTGTAGATACAGTGAAACCTCTCCCGCCAAAGCAGTTGGGGGAGATATGGGTTAGGGGGCCTAATATGATGATGGGTTATTTTAACAACCCACAGGCCACCCAGCTAACTTTAGATAAAAATGGTTGGGTACATACTGGAGATCTTGGATACTTTGATGAAAGTGGCCAACTTTTTGTGGTTGACCGAATTAAAGAACTCATTAAGTATAAAGGTTTTCAGGTAACTTCTGTTTTTGATGTAAAGGAATCAATACATGAAATGTCTAGTGGCGATTTTGGTTTTAACTAG

Protein Analysis

471

Amino Acids

51.15

Weight (kDa)

8.17

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 35 - 403 5.4e-87 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 308
AccII CGCG 1 cut(s) 758
AciI CCGC 1 cut(s) 1151
AcoI YGGCCR 3 cut(s) 19, 741, 1291
AcsI RAATTY 2 cut(s) 637, 1054
AfaI GTAC 5 cut(s) 60, 587, 598, 908, 1257
AfiI CCNNNNNNNGG 1 cut(s) 852
AgsI TTSAA 8 cut(s) 103, 267, 327, 479, 802, 838, 925, 1112
AhlI ACTAGT 1 cut(s) 1060
AjiI CACGTC 1 cut(s) 241
AluBI AGCT 7 cut(s) 178, 352, 486, 763, 947, 1088, 1231
AluI AGCT 7 cut(s) 178, 352, 486, 763, 947, 1088, 1231
Alw26I GTCTC 3 cut(s) 63, 94, 538
AoxI GGCC 8 cut(s) 19, 47, 527, 604, 741, 1184, 1221, 1291
ApeKI GCWGC 4 cut(s) 575, 760, 763, 944
ApoI RAATTY 2 cut(s) 637, 1054
Asp700I GAANNNNTTC 1 cut(s) 1042
AspLEI GCGC 2 cut(s) 580, 760
AspS9I GGNCC 3 cut(s) 527, 1067, 1184
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 3 cut(s) 73, 430, 835
AvaII GGWCC 1 cut(s) 1067
BalI TGGCCA 1 cut(s) 1293
BanI GGYRCC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 608
BbvI GCAGC 4 cut(s) 562, 750, 772, 956
BccI CCATC 3 cut(s) 20, 225, 1192
BceAI ACGGC 2 cut(s) 6, 728
BciVI GTATCC 1 cut(s) 1268
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 1 cut(s) 526
BcoDI GTCTC 3 cut(s) 63, 94, 538
BcuI ACTAGT 1 cut(s) 1060
BfaI CTAG 5 cut(s) 449, 546, 1061, 1392, 1414
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 1 cut(s) 1268
BglII AGATCT 1 cut(s) 1267
BisI GCNGC 4 cut(s) 576, 761, 764, 945
BlsI GCNGC 4 cut(s) 577, 762, 765, 946
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 1067
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 527, 1067, 1184
BmiI GGNNCC 2 cut(s) 310, 1185
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 2 cut(s) 133, 681
BpmI CTGGAG 3 cut(s) 827, 1125, 1284
Bpu10I CCTNAGC 1 cut(s) 608
BpuEI CTTGAG 3 cut(s) 164, 472, 978
BpuMI CCSGG 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 2 cut(s) 63, 94
BsaJI CCNNGG 2 cut(s) 84, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 852
Bse1I ACTGG 3 cut(s) 271, 390, 1267
Bse3DI GCAATG 2 cut(s) 312, 642
Bse8I GATNNNNATC 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 84, 289
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 852
BseMI GCAATG 2 cut(s) 312, 642
BseMII CTCAG 4 cut(s) 58, 622, 1022, 1130
BseNI ACTGG 3 cut(s) 271, 390, 1267
BseRI GAGGAG 2 cut(s) 939, 986
BseXI GCAGC 4 cut(s) 562, 750, 772, 956
BseYI CCCAGC 3 cut(s) 174, 683, 1227
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 1 cut(s) 758
BshFI GGCC 8 cut(s) 21, 49, 529, 606, 743, 1186, 1223, 1293
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 852
BsmAI GTCTC 3 cut(s) 63, 94, 538
BsnI GGCC 8 cut(s) 21, 49, 529, 606, 743, 1186, 1223, 1293
Bso31I GGTCTC 2 cut(s) 63, 94
Bsp143I GATC 3 cut(s) 660, 670, 1267
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 1 cut(s) 1151
BspANI GGCC 8 cut(s) 21, 49, 529, 606, 743, 1186, 1223, 1293
BspCNI CTCAG 4 cut(s) 57, 621, 1021, 1129
BspFNI CGCG 1 cut(s) 758
BspLI GGNNCC 2 cut(s) 310, 1185
BspMI ACCTGC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 2 cut(s) 63, 94
BsrDI GCAATG 2 cut(s) 312, 642
BsrI ACTGG 3 cut(s) 271, 390, 1267
BssECI CCNNGG 2 cut(s) 84, 289
BssMI GATC 3 cut(s) 660, 670, 1267
BssT1I CCWWGG 2 cut(s) 84, 289
Bst4CI ACNGT 7 cut(s) 190, 343, 397, 826, 893, 911, 1138
Bst6I CTCTTC 3 cut(s) 104, 115, 595
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 1090
BstDEI CTNAG 4 cut(s) 44, 608, 1008, 1116
BstDSI CCRYGG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 841
BstFNI CGCG 1 cut(s) 758
BstHHI GCGC 2 cut(s) 580, 760
BstKTI GATC 3 cut(s) 663, 673, 1270
BstMAI GTCTC 3 cut(s) 63, 94, 538
BstMBI GATC 3 cut(s) 660, 670, 1267
BstMWI GCNNNNNNNGC 2 cut(s) 308, 358
BstPI GGTNACC 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 524
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 4 cut(s) 562, 750, 772, 956
BstX2I RGATCY 1 cut(s) 1267
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 1 cut(s) 1267
BsuI GTATCC 1 cut(s) 1268
BsuRI GGCC 8 cut(s) 21, 49, 529, 606, 743, 1186, 1223, 1293
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 5 cut(s) 339, 447, 898, 1132, 1143
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 1090
CfoI GCGC 2 cut(s) 580, 760
Cfr13I GGNCC 3 cut(s) 527, 1067, 1184
Csp6I GTAC 5 cut(s) 59, 586, 597, 907, 1256
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 5 cut(s) 85, 206, 632, 728, 1382
CviQI GTAC 5 cut(s) 59, 586, 597, 907, 1256
DdeI CTNAG 4 cut(s) 44, 608, 1008, 1116
DpnI GATC 3 cut(s) 662, 672, 1269
DpnII GATC 3 cut(s) 660, 670, 1267
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 3 cut(s) 19, 741, 1291
Eam1104I CTCTTC 3 cut(s) 104, 115, 595
EarI CTCTTC 3 cut(s) 104, 115, 595
Eco130I CCWWGG 2 cut(s) 84, 289
Eco147I AGGCCT 1 cut(s) 606
Eco31I GGTCTC 2 cut(s) 63, 94
Eco47I GGWCC 1 cut(s) 1067
Eco91I GGTNACC 1 cut(s) 841
EcoO109I RGGNCCY 2 cut(s) 1067, 1184
EcoO65I GGTNACC 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 1054
EcoT14I CCWWGG 2 cut(s) 84, 289
EcoT22I ATGCAT 1 cut(s) 696
ErhI CCWWGG 2 cut(s) 84, 289
FaeI CATG 5 cut(s) 88, 209, 635, 731, 1385
FatI CATG 5 cut(s) 84, 205, 631, 727, 1381
FauI CCCGC 1 cut(s) 1158
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 4 cut(s) 576, 761, 764, 945
Fsp4HI GCNGC 4 cut(s) 576, 761, 764, 945
FspBI CTAG 5 cut(s) 449, 546, 1061, 1392, 1414
GlaI GCGC 2 cut(s) 579, 759
GluI GCNGC 4 cut(s) 576, 761, 764, 945
GsaI CCCAGC 3 cut(s) 178, 687, 1231
GsuI CTGGAG 3 cut(s) 827, 1125, 1284
HaeIII GGCC 8 cut(s) 21, 49, 529, 606, 743, 1186, 1223, 1293
HapII CCGG 1 cut(s) 525
HhaI GCGC 2 cut(s) 580, 760
Hin1II CATG 5 cut(s) 88, 209, 635, 731, 1385
Hin6I GCGC 2 cut(s) 578, 758
HinP1I GCGC 2 cut(s) 578, 758
HincII GTYRAC 2 cut(s) 186, 1309
HindII GTYRAC 2 cut(s) 186, 1309
HinfI GANTC 9 cut(s) 149, 371, 445, 479, 622, 628, 798, 1112, 1373
HpaII CCGG 1 cut(s) 525
HphI GGTGA 3 cut(s) 73, 430, 835
Hpy166II GTNNAC 2 cut(s) 186, 1309
Hpy188I TCNGA 7 cut(s) 157, 249, 349, 538, 627, 657, 1119
Hpy188III TCNNGA 5 cut(s) 489, 674, 795, 806, 1104
Hpy8I GTNNAC 2 cut(s) 186, 1309
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 4 cut(s) 103, 178, 415, 762
HpyCH4III ACNGT 7 cut(s) 190, 343, 397, 826, 893, 911, 1138
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 203, 302, 317, 694, 944, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 358
HpyF3I CTNAG 4 cut(s) 44, 608, 1008, 1116
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 5 cut(s) 88, 209, 635, 731, 1385
HspAI GCGC 2 cut(s) 578, 758
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 3 cut(s) 660, 670, 1267
LmnI GCTCC 2 cut(s) 262, 952
Lsp1109I GCAGC 4 cut(s) 562, 750, 772, 956
LweI GCATC 2 cut(s) 133, 681
MaeI CTAG 5 cut(s) 449, 546, 1061, 1392, 1414
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 39, 841, 1348
MalI GATC 3 cut(s) 662, 672, 1269
MboI GATC 3 cut(s) 660, 670, 1267
MboII GAAGA 7 cut(s) 91, 102, 105, 425, 459, 582, 823
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 1 cut(s) 1267
MlsI TGGCCA 1 cut(s) 1293
MluNI TGGCCA 1 cut(s) 1293
MlyI GAGTC 2 cut(s) 158, 622
Mox20I TGGCCA 1 cut(s) 1293
Mph1103I ATGCAT 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 1042
MscI TGGCCA 1 cut(s) 1293
Msp20I TGGCCA 1 cut(s) 1293
MspA1I CMGCKG 2 cut(s) 763, 1088
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 526
MunI CAATTG 1 cut(s) 303
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 2 cut(s) 308, 358
NciI CCSGG 1 cut(s) 526
NcoI CCATGG 1 cut(s) 84
NdeII GATC 3 cut(s) 660, 670, 1267
NlaIII CATG 5 cut(s) 88, 209, 635, 731, 1385
NlaIV GGNNCC 2 cut(s) 310, 1185
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 39, 841
NsiI ATGCAT 1 cut(s) 696
PceI AGGCCT 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 1042
PfeI GAWTC 7 cut(s) 371, 445, 479, 622, 798, 1112, 1373
PkrI GCNGC 4 cut(s) 577, 762, 765, 946
PleI GAGTC 2 cut(s) 157, 622
PpsI GAGTC 2 cut(s) 157, 622
PpuMI RGGWCCY 1 cut(s) 1067
PsiI TTATAA 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 1067
PspEI GGTNACC 1 cut(s) 841
PspFI CCCAGC 3 cut(s) 174, 683, 1227
PspN4I GGNNCC 2 cut(s) 310, 1185
PspPI GGNCC 3 cut(s) 527, 1067, 1184
PspPPI RGGWCCY 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 1267
PvuII CAGCTG 2 cut(s) 763, 1088
RsaI GTAC 5 cut(s) 60, 587, 598, 908, 1257
RsaNI GTAC 5 cut(s) 59, 586, 597, 907, 1256
SatI GCNGC 4 cut(s) 576, 761, 764, 945
Sau3AI GATC 3 cut(s) 660, 670, 1267
Sau96I GGNCC 3 cut(s) 527, 1067, 1184
SchI GAGTC 2 cut(s) 158, 622
ScrFI CCNGG 1 cut(s) 526
SfaNI GCATC 2 cut(s) 133, 681
SinI GGWCC 1 cut(s) 1067
SmlI CTYRAG 3 cut(s) 179, 487, 993
SmoI CTYRAG 3 cut(s) 179, 487, 993
SpeI ACTAGT 1 cut(s) 1060
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 1 cut(s) 1151
SspMI CTAG 5 cut(s) 449, 546, 1061, 1392, 1414
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 2 cut(s) 84, 289
TaaI ACNGT 7 cut(s) 190, 343, 397, 826, 893, 911, 1138
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 788, 1072
TaqII GACCGA 1 cut(s) 1326
TatI WGTACW 2 cut(s) 585, 906
TfiI GAWTC 7 cut(s) 371, 445, 479, 622, 798, 1112, 1373
TscAI CASTG 5 cut(s) 346, 447, 898, 1132, 1143
TseFI GTSAC 2 cut(s) 39, 841
TseI GCWGC 4 cut(s) 575, 760, 763, 944
Tsp45I GTSAC 2 cut(s) 39, 841
TspDTI ATGAA 5 cut(s) 453, 631, 906, 1299, 1398
TspRI CASTG 5 cut(s) 346, 447, 898, 1132, 1143
VpaK11BI GGWCC 1 cut(s) 1067
XapI RAATTY 2 cut(s) 637, 1054
XcmI CCANNNNNNNNNTGG 2 cut(s) 382, 802
XmnI GAANNNNTTC 1 cut(s) 1042
XspI CTAG 5 cut(s) 449, 546, 1061, 1392, 1414
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.