Rh5CG410000

4-coumarate--CoA ligase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000517
Physical Location & Seq
Reverse (-)
55372299 .. 55372634
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG410000.1

Sequence Viewer

Length: 336 bp
ATGGCCATGATGGCCGCGCCTCTGGTACTACCCGGAGACCCAAATCTCACCATGGTCTCTTTGCTCTTCAAAAACTCTTCTTCTTATCCACACAAACCTGCCCTCATTGATGCCGAGTCCTCTGAAACCCTGTCCTTCTCCCAGTTCAAGTCAATGGTTATCAAGGTTGCCCATGGCTTAATCCATCTGGGTATTAAGAAAAACGACGTGGTTCTGATTTTCGCTCCCAGTTCAATCCAGTTTCCTATTTGTTTCCTTGGGAATTATTGCAATTGGTGGCGTTGCAACAACTTCAGATCCTCTCTACACTGTTTCAGAGCTTTCCAAGCAAGTTAA

Protein Analysis

111

Amino Acids

12.4

Weight (kDa)

9.07

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 24 - 87 2e-12 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 2 cut(s) 3, 12
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 3 cut(s) 70, 148, 234
AjiI CACGTC 1 cut(s) 208
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 30, 61
AlwI GGATC 1 cut(s) 291
AoxI GGCC 2 cut(s) 3, 12
AspLEI GCGC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 40
BalI TGGCCA 1 cut(s) 5
BccI CCATC 2 cut(s) 4, 192
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 30, 61
BfuAI ACCTGC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 33
BmgBI CACGTC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 33
BmrI ACTGGG 2 cut(s) 136, 222
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 2 cut(s) 136, 222
BpuMI CCSGG 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 30, 61
BsaJI CCNNGG 3 cut(s) 51, 172, 256
Bse1I ACTGG 3 cut(s) 142, 228, 238
BseDI CCNNGG 3 cut(s) 51, 172, 256
BseNI ACTGG 3 cut(s) 142, 228, 238
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 5, 14
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 30, 61
BsnI GGCC 2 cut(s) 5, 14
Bso31I GGTCTC 2 cut(s) 30, 61
Bsp143I GATC 1 cut(s) 296
Bsp19I CCATGG 2 cut(s) 51, 172
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 5, 14
BspFNI CGCG 1 cut(s) 17
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 291
BspQI GCTCTTC 1 cut(s) 71
BspTNI GGTCTC 2 cut(s) 30, 61
BsrI ACTGG 3 cut(s) 142, 228, 238
BssECI CCNNGG 3 cut(s) 51, 172, 256
BssMI GATC 1 cut(s) 296
BssT1I CCWWGG 3 cut(s) 51, 172, 256
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 71, 82
BstDSI CCRYGG 2 cut(s) 51, 172
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 2 cut(s) 30, 61
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 11, 326
BstSCI CCNGG 1 cut(s) 31
BstUI CGCG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 2 cut(s) 5, 14
BtgI CCRYGG 2 cut(s) 51, 172
BtrI CACGTC 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 26
CviAII CATG 3 cut(s) 7, 52, 173
CviJI RGCY 4 cut(s) 5, 14, 177, 320
CviKI_1 RGCY 4 cut(s) 5, 14, 177, 320
CviQI GTAC 1 cut(s) 26
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EaeI YGGCCR 2 cut(s) 3, 12
Eam1104I CTCTTC 2 cut(s) 71, 82
EarI CTCTTC 2 cut(s) 71, 82
Eco130I CCWWGG 3 cut(s) 51, 172, 256
Eco31I GGTCTC 2 cut(s) 30, 61
Eco57I CTGAAG 1 cut(s) 277
EcoT14I CCWWGG 3 cut(s) 51, 172, 256
ErhI CCWWGG 3 cut(s) 51, 172, 256
FaeI CATG 3 cut(s) 10, 55, 176
FaiI YATR 3 cut(s) 8, 53, 174
FatI CATG 3 cut(s) 6, 51, 172
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 5, 14
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 19
Hin1II CATG 3 cut(s) 10, 55, 176
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 124, 216, 296, 317
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 270, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 326
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 10, 55, 176
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 296
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 8 cut(s) 8, 46, 111, 143, 155, 173, 241, 251
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 207
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 3 cut(s) 58, 69, 72
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 262, 271
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 30, 113, 130, 310
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 179, 195, 334
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 271
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 11, 326
NciI CCSGG 1 cut(s) 33
NcoI CCATGG 2 cut(s) 51, 172
NdeII GATC 1 cut(s) 296
NlaIII CATG 3 cut(s) 10, 55, 176
NmeAIII GCCGAG 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 179, 195, 334
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 296
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 33
SetI ASST 4 cut(s) 100, 168, 210, 322
SfaNI GCATC 1 cut(s) 100
SfiI GGCCNNNNNGGCC 1 cut(s) 11
Sse9I AATT 2 cut(s) 262, 271
SsiI CCGC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 3 cut(s) 51, 172, 256
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 210
TasI AATT 2 cut(s) 262, 271
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 3 cut(s) 179, 195, 334
Tru9I TTAA 3 cut(s) 179, 195, 334
TscAI CASTG 1 cut(s) 314
TspRI CASTG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.