Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

30976104 .. 30976392

Gene Structure 289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCATATGTAGTGAGAGCAGCTAGTACTGATCTGAGCACTGAAGACCAAGTCATTCAATTTGTTGCCGGCCTGGTGGCCCCCTACAAAAAAGTCAGAAAAGTAGGGTTTATATCTGCCATTCCAAGATCAGCTGCAAGCAAAATCTTGAGGAAGGAACTTGTTAGTTTACAAAGCAAACAACAAATGGTCTCCAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

67

Amino Acids

7.38

Weight (kDa)

10.44

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	23, 134
AluI	AGCT	2 cut(s)	23, 134
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	70, 78
ApeKI	GCWGC	2 cut(s)	20, 134
AspS9I	GGNCC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	32, 121
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	21, 135
BlsI	GCNGC	2 cut(s)	22, 136
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	32, 121
BshFI	GGCC	2 cut(s)	72, 80
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	72, 80
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	31, 128
BspANI	GGCC	2 cut(s)	72, 80
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	2 cut(s)	31, 128
Bst2UI	CCWGG	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	70, 139
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	34, 131
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	31, 128
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	32, 121
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	72, 80
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	70, 139
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	27
CviJI	RGCY	4 cut(s)	23, 72, 80, 134
CviKI_1	RGCY	4 cut(s)	23, 72, 80, 134
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	33, 130
DpnII	GATC	2 cut(s)	31, 128
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	72
FaiI	YATR	4 cut(s)	7, 9, 113, 202
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	21, 135
Fsp4HI	GCNGC	2 cut(s)	21, 135
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	2 cut(s)	21, 135
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	72, 80
HapII	CCGG	1 cut(s)	69
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	36, 98
Hpy188III	TCNNGA	2 cut(s)	148, 195
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	31, 128
LpnPI	CCDG	3 cut(s)	59, 82, 86
Lsp1109I	GCAGC	2 cut(s)	32, 121
MaeI	CTAG	1 cut(s)	24
MalI	GATC	2 cut(s)	33, 130
MboI	GATC	2 cut(s)	31, 128
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	59
MnlI	CCTC	1 cut(s)	144
MroNI	GCCGGC	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	2 cut(s)	31, 128
NgoMIV	GCCGGC	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	22, 136
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	21, 135
Sau3AI	GATC	2 cut(s)	31, 128
Sau96I	GGNCC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	2 cut(s)	25, 136
SgeI	CNNG	9 cut(s)	36, 62, 81, 85, 86, 138, 150, 160, 173
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	59
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	72
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	26
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	20, 134
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.