Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

17146250 .. 17155438

Gene Structure 9189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG192200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTTGTGGATCGACTCAAAGAGCTCATCAAGTGTTATGGTTATCAGGTTGCTCCTAGCAGAGATTGAAGAGCTGTTACTTACTCACCTTGAAATATTGGATGCTGTTGTAATCCCATTTCCGGATGCTAAAGCCGGTGAGGTTCTGATTGCTTATGTTGTTTGTGCACCCAATGGCTTGCTAACTGAACAAGACATTCTAATATTTGTGGAGAAGCTGGTTGCACCGTTTAAAAGACTGTGGAGCATAAGTTTTATAACCAGTGTTCCTAAATCGGCTTCCGGAAAGATTCTGAGAAGGGAGCTTATACAGAAAGTCCGGTCAAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

110

Amino Acids

12.27

Weight (kDa)

6.57

Isoelectric Point (pI)

63.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	21 - 96	1.2e-12	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccIII	TCCGGA	2 cut(s)	121, 281
AclWI	GGATC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	68, 92
AluBI	AGCT	4 cut(s)	24, 73, 217, 304
AluI	AGCT	4 cut(s)	24, 73, 217, 304
Alw21I	GWGCWC	2 cut(s)	26, 169
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	17
Aor13HI	TCCGGA	2 cut(s)	121, 281
ApaLI	GTGCAC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	77, 149
BaeGI	GKGCMC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
Bbv12I	GWGCWC	2 cut(s)	26, 169
BfaI	CTAG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	91, 115
BsaWI	WCCGGW	3 cut(s)	121, 281, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	261
BseAI	TCCGGA	2 cut(s)	121, 281
BseGI	GGATG	2 cut(s)	106, 130
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	26, 169
BsiSI	CCGG	4 cut(s)	122, 135, 282, 319
BslI	CCNNNNNNNGG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	26, 169
Bsp13I	TCCGGA	2 cut(s)	121, 281
Bsp143I	GATC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	285
BspEI	TCCGGA	2 cut(s)	121, 281
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	134
BssMI	GATC	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	228, 240
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	106, 130
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	106, 130
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	134
CviJI	RGCY	7 cut(s)	24, 73, 134, 177, 217, 278, 304
CviKI_1	RGCY	7 cut(s)	24, 73, 134, 177, 217, 278, 304
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DraI	TTTAAA	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	26
FaiI	YATR	7 cut(s)	38, 156, 248, 257, 308, 329, 331
FauNDI	CATATG	1 cut(s)	329
FokI	GGATG	2 cut(s)	113, 137
FriOI	GRGCYC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	56
HapII	CCGG	4 cut(s)	122, 135, 282, 319
HinfI	GANTC	2 cut(s)	14, 289
HpaII	CCGG	4 cut(s)	122, 135, 282, 319
HphI	GGTGA	2 cut(s)	77, 149
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	147, 294
Hpy188III	TCNNGA	2 cut(s)	122, 282
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	228, 240
HpyCH4V	TGCA	2 cut(s)	167, 224
HpyF3I	CTNAG	1 cut(s)	293
Kpn2I	TCCGGA	2 cut(s)	121, 281
Kzo9I	GATC	1 cut(s)	9
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	3 cut(s)	57, 243, 301
LpnPI	CCDG	6 cut(s)	31, 135, 148, 203, 274, 295
LweI	GCATC	2 cut(s)	91, 115
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	26, 169
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	1 cut(s)	133
MroI	TCCGGA	2 cut(s)	121, 281
MseI	TTAA	1 cut(s)	231
MspI	CCGG	4 cut(s)	122, 135, 282, 319
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	8
SduI	GDGCHC	2 cut(s)	26, 169
SetI	ASST	7 cut(s)	26, 50, 75, 90, 144, 219, 306
SfaNI	GCATC	2 cut(s)	91, 115
SspI	AATATT	2 cut(s)	96, 204
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	228, 240
TaqI	TCGA	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	268
TspRI	CASTG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.