Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

55371353 .. 55372013

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTCCATGTCTCTGGATTGGCCATCATCACTTACGCGCAGCTGCGGAAGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAAATTTTGATGACTGTTGAGAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAATCTTTCATCTTTAAAGCATATTGGGTCCGGTGCAGCTCATCTGGGGAAAGAGTTGATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTATGGTATGACAGAAACCTGTGGAATAGTTTCAGTTGAGAATGCACTAGTAGGACCTCGACATAGTGGTTCAGCTGGAACTCTTGTTTCCGGAGATGAATCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

133

Amino Acids

14.22

Weight (kDa)

8.93

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	1 - 130	1.7e-22	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	2 cut(s)	116, 188
AfiI	CCNNNNNNNGG	2 cut(s)	132, 133
AgsI	TTSAA	1 cut(s)	82
AhlI	ACTAGT	1 cut(s)	340
AluBI	AGCT	3 cut(s)	43, 227, 368
AluI	AGCT	3 cut(s)	43, 227, 368
Alw26I	GTCTC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	3 cut(s)	40, 43, 224
ApoI	RAATTY	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	216, 347
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	216, 347
BalI	TGGCCA	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	30, 52, 236
BccI	CCATC	2 cut(s)	32, 241
BcoDI	GTCTC	1 cut(s)	16
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	41, 44, 225
BlsI	GCNGC	3 cut(s)	42, 45, 226
Bme18I	GGWCC	2 cut(s)	216, 347
BmgT120I	GGNCC	2 cut(s)	216, 347
BmiI	GGNNCC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	218, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 133
BseAI	TCCGGA	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	132, 133
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	30, 52, 236
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	219, 384
BslI	CCNNNNNNNGG	2 cut(s)	132, 133
BsmAI	GTCTC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	383
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	106, 173
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	30, 52, 236
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	178, 402
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	216, 347
Csp6I	GTAC	2 cut(s)	115, 187
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	4 cut(s)	23, 43, 227, 368
CviKI_1	RGCY	4 cut(s)	23, 43, 227, 368
CviQI	GTAC	2 cut(s)	115, 187
DdeI	CTNAG	1 cut(s)	288
DraI	TTTAAA	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	216, 347
Eco91I	GGTNACC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	121
FaeI	CATG	1 cut(s)	11
FaiI	YATR	6 cut(s)	9, 152, 210, 297, 302, 357
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	41, 44, 225
Fsp4HI	GCNGC	3 cut(s)	41, 44, 225
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	41, 44, 225
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	2 cut(s)	219, 384
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	78, 392
HpaII	CCGG	2 cut(s)	219, 384
HphI	GGTGA	1 cut(s)	115
Hpy188III	TCNNGA	4 cut(s)	15, 75, 86, 384
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	106, 173
HpyCH4V	TGCA	3 cut(s)	224, 260, 338
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	11
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	383
LpnPI	CCDG	8 cut(s)	71, 88, 218, 232, 275, 325, 354, 397
Lsp1109I	GCAGC	3 cut(s)	30, 52, 236
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	2 cut(s)	93, 264
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	4 cut(s)	153, 244, 282, 360
Mox20I	TGGCCA	1 cut(s)	23
MroI	TCCGGA	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	2 cut(s)	180, 203
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	43, 368
MspI	CCGG	2 cut(s)	219, 384
Mva1269I	GAATGC	1 cut(s)	340
MvnI	CGCG	1 cut(s)	38
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	78, 392
PkrI	GCNGC	3 cut(s)	42, 45, 226
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	216, 347
PspPPI	RGGWCCY	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	43, 368
RsaI	GTAC	2 cut(s)	116, 188
RsaNI	GTAC	2 cut(s)	115, 187
SaqAI	TTAA	2 cut(s)	180, 203
SatI	GCNGC	3 cut(s)	41, 44, 225
Sau96I	GGNCC	2 cut(s)	216, 347
SetI	ASST	7 cut(s)	45, 123, 229, 280, 314, 352, 370
SinI	GGWCC	2 cut(s)	216, 347
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
SpeI	ACTAGT	1 cut(s)	340
Sse9I	AATT	2 cut(s)	93, 264
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	106, 173
TaqI	TCGA	2 cut(s)	68, 352
TasI	AATT	2 cut(s)	93, 264
TatI	WGTACW	2 cut(s)	114, 186
TfiI	GAWTC	2 cut(s)	78, 392
Tru1I	TTAA	2 cut(s)	180, 203
Tru9I	TTAA	2 cut(s)	180, 203
TscAI	CASTG	2 cut(s)	178, 402
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	40, 43, 224
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	178, 402
VpaK11BI	GGWCC	2 cut(s)	216, 347
XapI	RAATTY	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.