Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

61132101 .. 61134014

Gene Structure 1914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33403

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCCAATGTTCCATGTCTTTGGATTGGCCATCATCACTTACGTGCAGCTGCGGAAGGGAAATGCTGTGATTTCGATGTCCAGATTTAATCTGGAGAAGATTTTGATGACTGTTGAGAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAACCTTTCATCTTTGAAGCATATTGGGTCCGGTGCAGCTTATCTGGGGAAAGGGTTGATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTATGGTATGACAGAAACCTGTGGAACTGTTTCAGTTGAGAATGCACTAGTAAGACCTCAACATAGTGGTTCAGCTGGAATTCTTGTTTCCGGAGTTGAATCTCAGATAGTCAGTGTAGATACACTCAAACCTCTCCCTCCAAAGCAGCTGGGGGAGATATGGGTTAGGGGGCCTAATATGATGATAGGTAATGATGCGTTGTTCATCCCAAAGGAGAATATTTCTTTGTTCATTACCATGTGGATCGCACTCCCTCCCCTCACAATGTTCACTCTTTCCCGGCTGAAGATTTTATGTGGAATGTTTTCGGAGAAATTTAAATTGTTTAACAGACAAAAGTACTCTCTTTTTCCAATGAGAATTCTCAGTTATGGATGCCTTCATTCAATAAAATTATTCAATCTAATCAGGTTGGAAACCTTTGCTTTAGATTTGTCCATCAAGTCTATTTGGCTTAAATTTGTATGGAAGTTGGTAGAACTTTTCATTGAGTTGTATTTAAGGCTTTTATATGCTCTTGCAATATTCCTGCATATGATAACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

282

Amino Acids

31.8

Weight (kDa)

9.61

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	1 - 163	2.1e-34	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	378, 614, 660, 758
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	3 cut(s)	122, 194, 641
AfiI	CCNNNNNNNGG	2 cut(s)	138, 139
AgsI	TTSAA	4 cut(s)	211, 398, 687, 700
AhlI	ACTAGT	1 cut(s)	346
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	49, 233, 374, 448
AluI	AGCT	4 cut(s)	49, 233, 374, 448
AlwI	GGATC	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	2 cut(s)	27, 470
ApeKI	GCWGC	4 cut(s)	46, 49, 230, 445
ApoI	RAATTY	4 cut(s)	378, 614, 660, 758
Asp700I	GAANNNNTTC	2 cut(s)	328, 604
AspS9I	GGNCC	2 cut(s)	222, 470
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	36, 58, 242, 457
BccI	CCATC	3 cut(s)	38, 247, 746
BcnI	CCSGG	1 cut(s)	580
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	4 cut(s)	47, 50, 231, 446
BlsI	GCNGC	4 cut(s)	48, 51, 232, 447
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	222, 470
BmiI	GGNNCC	2 cut(s)	223, 471
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	2 cut(s)	484, 665
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	2 cut(s)	224, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 139
BseAI	TCCGGA	1 cut(s)	389
BseGI	GGATG	2 cut(s)	504, 680
BseLI	CCNNNNNNNGG	2 cut(s)	138, 139
BseMII	CTCAG	3 cut(s)	308, 416, 679
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	4 cut(s)	36, 58, 242, 457
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	2 cut(s)	65, 249
BshFI	GGCC	2 cut(s)	29, 472
BsiSI	CCGG	3 cut(s)	225, 390, 580
BslI	CCNNNNNNNGG	2 cut(s)	138, 139
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	29, 472
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	543
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	29, 472
BspCNI	CTCAG	3 cut(s)	307, 415, 678
BspEI	TCCGGA	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	845
BspLI	GGNNCC	2 cut(s)	223, 471
BspPI	GGATC	1 cut(s)	551
BssMI	GATC	1 cut(s)	543
Bst4CI	ACNGT	3 cut(s)	112, 179, 328
BstBAI	YACGTR	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	294, 402, 665
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	504, 680
BstKTI	GATC	1 cut(s)	546
BstMBI	GATC	1 cut(s)	543
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	578
BstV1I	GCAGC	4 cut(s)	36, 58, 242, 457
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	29, 472
BtsCI	GGATG	2 cut(s)	504, 680
BtsIMutI	CAGTG	2 cut(s)	184, 418
CciI	TCATGA	1 cut(s)	845
Cfr13I	GGNCC	2 cut(s)	222, 470
Csp6I	GTAC	3 cut(s)	121, 193, 640
CviAII	CATG	3 cut(s)	14, 538, 846
CviJI	RGCY	9 cut(s)	29, 49, 233, 374, 448, 472, 583, 754, 805
CviKI_1	RGCY	9 cut(s)	29, 49, 233, 374, 448, 472, 583, 754, 805
CviQI	GTAC	3 cut(s)	121, 193, 640
DdeI	CTNAG	3 cut(s)	294, 402, 665
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
DraI	TTTAAA	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	127
EcoRI	GAATTC	2 cut(s)	378, 660
FaeI	CATG	3 cut(s)	17, 541, 849
FatI	CATG	3 cut(s)	13, 537, 845
FauNDI	CATATG	1 cut(s)	834
Fnu4HI	GCNGC	4 cut(s)	47, 50, 231, 446
FokI	GGATG	2 cut(s)	491, 687
Fsp4HI	GCNGC	4 cut(s)	47, 50, 231, 446
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	4 cut(s)	47, 50, 231, 446
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	29, 472
HapII	CCGG	3 cut(s)	225, 390, 580
Hin1II	CATG	3 cut(s)	17, 541, 849
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	3 cut(s)	225, 390, 580
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	2 cut(s)	405, 610
Hpy188III	TCNNGA	4 cut(s)	81, 92, 390, 846
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	49, 689
HpyCH4III	ACNGT	3 cut(s)	112, 179, 328
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	6 cut(s)	46, 230, 266, 344, 821, 832
HpyF3I	CTNAG	3 cut(s)	294, 402, 665
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	17, 541, 849
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	543
Lsp1109I	GCAGC	4 cut(s)	36, 58, 242, 457
LweI	GCATC	2 cut(s)	484, 665
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	2 cut(s)	109, 598
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	7 cut(s)	270, 378, 614, 620, 660, 692, 758
MluNI	TGGCCA	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	8 cut(s)	159, 250, 288, 366, 441, 447, 564, 569
Mox20I	TGGCCA	1 cut(s)	29
MroI	TCCGGA	1 cut(s)	389
MroXI	GAANNNNTTC	2 cut(s)	328, 604
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	6 cut(s)	87, 186, 618, 627, 756, 800
MslI	CAYNNNNRTG	2 cut(s)	41, 536
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	3 cut(s)	49, 374, 448
MspI	CCGG	3 cut(s)	225, 390, 580
MspR9I	CCNGG	1 cut(s)	580
Mva1269I	GAATGC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	580
NdeI	CATATG	1 cut(s)	834
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	3 cut(s)	17, 541, 849
NlaIV	GGNNCC	2 cut(s)	223, 471
NmuCI	GTSAC	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	41
PagI	TCATGA	1 cut(s)	845
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	2 cut(s)	328, 604
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	48, 51, 232, 447
Ppu21I	YACGTR	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	223, 471
PspPI	GGNCC	2 cut(s)	222, 470
PvuII	CAGCTG	3 cut(s)	49, 374, 448
RsaI	GTAC	3 cut(s)	122, 194, 641
RsaNI	GTAC	3 cut(s)	121, 193, 640
RseI	CAYNNNNRTG	2 cut(s)	41, 536
SaqAI	TTAA	6 cut(s)	87, 186, 618, 627, 756, 800
SatI	GCNGC	4 cut(s)	47, 50, 231, 446
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	2 cut(s)	222, 470
ScaI	AGTACT	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	580
SfaNI	GCATC	2 cut(s)	484, 665
SinI	GGWCC	1 cut(s)	222
SmiI	ATTTAAAT	1 cut(s)	619
SmiMI	CAYNNNNRTG	2 cut(s)	41, 536
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	7 cut(s)	270, 378, 614, 620, 660, 692, 758
SsiI	CCGC	1 cut(s)	52
SspI	AATATT	2 cut(s)	520, 825
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	578
SwaI	ATTTAAAT	1 cut(s)	619
TaaI	ACNGT	3 cut(s)	112, 179, 328
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	74
TasI	AATT	7 cut(s)	270, 378, 614, 620, 660, 692, 758
TatI	WGTACW	3 cut(s)	120, 192, 639
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	6 cut(s)	87, 186, 618, 627, 756, 800
Tru9I	TTAA	6 cut(s)	87, 186, 618, 627, 756, 800
TscAI	CASTG	2 cut(s)	184, 418
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	46, 49, 230, 445
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	5 cut(s)	192, 493, 520, 671, 775
TspRI	CASTG	2 cut(s)	184, 418
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	4 cut(s)	378, 614, 660, 758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	2 cut(s)	328, 604
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.