Rroxscaffold_1G00023020

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
28477961 .. 28481570
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023020.1

Sequence Viewer

Length: 1197 bp
ATGGTCTCTTTCCTCTTCAAAAACTCTTCTTCTTATCCACACAAACCTGCCCTCATTGATGCCGAGTCCTCTGAAACCTTGTCCTTCTCCCAGTTCAAGTCAATGGTCATCAAGGTTGCCCTTGGCTTAATCCATTTGGGCCTCAGCAAAGGTGTGAATCTGACTCATGGGAATTTCATTGCTTCTTCCCTGATGGTCACGCAAGATCAAGAAGTGGCTGGAAAGATGCACCATTTGTTTCTCTCTGTGTTGCTAATGTTCCATGTCTTTGGATTGGCCATCATCACTTACGCGCAGCTGCGGAAGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAGATTTTGATGACTCTTGAGAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAACCTTTCATCTTTGAAGCATATTGGGTCCGGTGCAGCTCATCTGGTGAAAGGGTTGATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTATGGTATGACAGAAACCTGTGGAATTGTTTCAGTTGAGAATGCACTAGTAGGACTTCGACATAGTGGTTCAGCTGGAACTCTTGTTTCCGGAGTTGAATCTCAGATAGTCAGTGTAGATACACTCAAACCTCTCCCTCCAAAGCAGCTGGGGGAGATATGGGTTAGGGGGCCTAATATGATGATAGGTTATTTTAACAACCCACAGGCCACCCAGCTAACTTTAGATAAAAATGGTTGGATACATACTGGAAATCTTGGATACTTTGATGAAAGTGGCCAACTTTTTGTGGTTGACCGAATTAAAGAACTCATTAAGTATAAAGGTTTTCAGGTAGCACCAGCTGAACTTGAAGGCCTGTTAGTTTCTCACCCTGAAATATTAGACGCCATTGTCATCCAATTTCGTGATGCTGAAGCTGGTGAGGTCCCTGTTGCATATGCTGTGCGCTCGCCAAACAGTTCACTGAACGAAGAAGATATCAAGAGTTTTATAGCGAGTCAGGTTGCATCCTTTAAAAGACTGCGACAAGTGACGTTCATAAACACTGTCCCTAAGTCGGCATCAGGAAAAATCCTCAGAAGAGAGCTCATCGAGAAAGTACGGTCCAAAATAGAAGTATATATTCCTCATTCTCATGTTTGTTAA

Protein Analysis

398

Amino Acids

43.72

Weight (kDa)

9.11

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 47 - 248 8e-42 AMP-binding enzyme
AMP-binding_C PF13193 299 - 374 8e-14 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 55
AccII CGCG 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 638
AciI CCGC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 276, 826
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 984
AcyI GRCGYC 1 cut(s) 936
AfaI GTAC 3 cut(s) 371, 443, 1152
AfiI CCNNNNNNNGG 3 cut(s) 387, 388, 1108
AgsI TTSAA 6 cut(s) 19, 97, 337, 460, 647, 902
AhlI ACTAGT 1 cut(s) 595
AluBI AGCT 8 cut(s) 298, 482, 623, 697, 766, 893, 968, 1138
AluI AGCT 8 cut(s) 298, 482, 623, 697, 766, 893, 968, 1138
Alw21I GWGCWC 1 cut(s) 1140
Alw26I GTCTC 1 cut(s) 10
Aor13HI TCCGGA 1 cut(s) 638
AoxI GGCC 6 cut(s) 139, 276, 719, 756, 826, 904
ApeKI GCWGC 4 cut(s) 295, 298, 479, 694
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 2 cut(s) 295, 999
AspS9I GGNCC 5 cut(s) 139, 471, 719, 976, 1155
AsuHPI GGTGA 4 cut(s) 370, 502, 911, 983
AvaII GGWCC 3 cut(s) 471, 976, 1155
BalI TGGCCA 2 cut(s) 278, 828
BanII GRGCYC 1 cut(s) 1140
Bbv12I GWGCWC 1 cut(s) 1140
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 4 cut(s) 285, 307, 491, 706
BccI CCATC 3 cut(s) 187, 287, 496
BciVI GTATCC 2 cut(s) 783, 803
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 1 cut(s) 596
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 2 cut(s) 783, 803
BisI GCNGC 4 cut(s) 296, 299, 480, 695
BlsI GCNGC 4 cut(s) 297, 300, 481, 696
Bme18I GGWCC 3 cut(s) 471, 976, 1155
BmgT120I GGNCC 5 cut(s) 139, 471, 719, 976, 1155
BmiI GGNNCC 3 cut(s) 472, 720, 978
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 5 cut(s) 49, 216, 949, 1067, 1121
BmuI ACTGGG 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 2 cut(s) 143, 543
BpuEI CTTGAG 2 cut(s) 383, 513
BsaHI GRCGYC 1 cut(s) 936
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 2 cut(s) 473, 638
Bsc4I CCNNNNNNNGG 3 cut(s) 387, 388, 1108
Bse1I ACTGG 2 cut(s) 91, 802
Bse3DI GCAATG 1 cut(s) 177
BseAI TCCGGA 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 945, 1058
BseLI CCNNNNNNNGG 3 cut(s) 387, 388, 1108
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 157, 557, 665, 1141
BseNI ACTGG 2 cut(s) 91, 802
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 4 cut(s) 285, 307, 491, 706
BseYI CCCAGC 2 cut(s) 697, 762
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 6 cut(s) 141, 278, 721, 758, 828, 906
BsiHKAI GWGCWC 1 cut(s) 1140
BsiSI CCGG 2 cut(s) 474, 639
BslFI GGGAC 2 cut(s) 962, 1085
BslI CCNNNNNNNGG 3 cut(s) 387, 388, 1108
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 2 cut(s) 962, 1085
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 6 cut(s) 141, 278, 721, 758, 828, 906
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 1140
Bsp13I TCCGGA 1 cut(s) 638
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 301
BspANI GGCC 6 cut(s) 141, 278, 721, 758, 828, 906
BspCNI CTCAG 4 cut(s) 156, 556, 664, 1140
BspEI TCCGGA 1 cut(s) 638
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 472, 720, 978
BspMI ACCTGC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 91, 802
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 936
BssT1I CCWWGG 1 cut(s) 121
Bst4CI ACNGT 4 cut(s) 428, 1010, 1099, 1155
Bst6I CTCTTC 3 cut(s) 20, 31, 1126
BstACI GRCGYC 1 cut(s) 936
BstC8I GCNNGC 1 cut(s) 1001
BstDEI CTNAG 5 cut(s) 143, 543, 651, 1104, 1127
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 2 cut(s) 945, 1058
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 2 cut(s) 295, 999
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 376
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 4 cut(s) 285, 307, 491, 706
BstXI CCANNNNNNTGG 1 cut(s) 269
BsuI GTATCC 2 cut(s) 783, 803
BsuRI GGCC 6 cut(s) 141, 278, 721, 758, 828, 906
BtsCI GGATG 2 cut(s) 945, 1058
BtsIMutI CAGTG 4 cut(s) 433, 667, 1013, 1095
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 1001
CfoI GCGC 2 cut(s) 295, 999
Cfr13I GGNCC 5 cut(s) 139, 471, 719, 976, 1155
CseI GACGC 1 cut(s) 944
Csp6I GTAC 3 cut(s) 370, 442, 1151
CviAII CATG 3 cut(s) 167, 263, 1187
CviQI GTAC 3 cut(s) 370, 442, 1151
DdeI CTNAG 5 cut(s) 143, 543, 651, 1104, 1127
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DraI TTTAAA 1 cut(s) 1066
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 2 cut(s) 276, 826
Eam1104I CTCTTC 3 cut(s) 20, 31, 1126
EarI CTCTTC 3 cut(s) 20, 31, 1126
Ecl136II GAGCTC 1 cut(s) 1138
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 906
Eco24I GRGCYC 1 cut(s) 1140
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 1030
Eco47I GGWCC 3 cut(s) 471, 976, 1155
Eco53kI GAGCTC 1 cut(s) 1138
Eco57I CTGAAG 1 cut(s) 984
Eco91I GGTNACC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 1138
EcoO109I RGGNCCY 2 cut(s) 719, 976
EcoO65I GGTNACC 1 cut(s) 376
EcoRV GATATC 1 cut(s) 1030
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 1140
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 3 cut(s) 170, 266, 1190
FaqI GGGAC 2 cut(s) 962, 1085
FatI CATG 3 cut(s) 166, 262, 1186
FauNDI CATATG 1 cut(s) 988
Fnu4HI GCNGC 4 cut(s) 296, 299, 480, 695
FokI GGATG 2 cut(s) 932, 1045
FriOI GRGCYC 1 cut(s) 1140
Fsp4HI GCNGC 4 cut(s) 296, 299, 480, 695
FspBI CTAG 1 cut(s) 596
GlaI GCGC 2 cut(s) 294, 998
GluI GCNGC 4 cut(s) 296, 299, 480, 695
GsaI CCCAGC 2 cut(s) 701, 766
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 6 cut(s) 141, 278, 721, 758, 828, 906
HapII CCGG 2 cut(s) 474, 639
HgaI GACGC 1 cut(s) 944
HhaI GCGC 2 cut(s) 295, 999
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 3 cut(s) 170, 266, 1190
Hin6I GCGC 2 cut(s) 293, 997
HinP1I GCGC 2 cut(s) 293, 997
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HinfI GANTC 7 cut(s) 65, 157, 163, 333, 358, 647, 1048
HpaII CCGG 2 cut(s) 474, 639
HphI GGTGA 4 cut(s) 370, 502, 911, 983
Hpy166II GTNNAC 2 cut(s) 844, 1013
Hpy188I TCNGA 4 cut(s) 73, 162, 654, 1130
Hpy188III TCNNGA 9 cut(s) 209, 330, 341, 362, 639, 956, 1033, 1116, 1144
Hpy8I GTNNAC 2 cut(s) 844, 1013
HpyAV CCTTC 3 cut(s) 94, 298, 896
HpyCH4III ACNGT 4 cut(s) 428, 1010, 1099, 1155
HpyCH4IV ACGT 1 cut(s) 1085
HpyCH4V TGCA 6 cut(s) 229, 479, 515, 593, 986, 1058
HpyF3I CTNAG 5 cut(s) 143, 543, 651, 1104, 1127
HpySE526I ACGT 1 cut(s) 1085
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 3 cut(s) 170, 266, 1190
HspAI GCGC 2 cut(s) 293, 997
Kpn2I TCCGGA 1 cut(s) 638
Kzo9I GATC 1 cut(s) 205
Lsp1109I GCAGC 4 cut(s) 285, 307, 491, 706
LweI GCATC 5 cut(s) 49, 216, 949, 1067, 1121
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 1085
MaeIII GTNAC 3 cut(s) 196, 376, 1081
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 8 cut(s) 7, 18, 21, 177, 358, 1034, 1037, 1143
MhlI GDGCHC 1 cut(s) 1140
MlsI TGGCCA 2 cut(s) 278, 828
MluCI AATT 5 cut(s) 172, 519, 573, 849, 950
MluNI TGGCCA 2 cut(s) 278, 828
MlyI GAGTC 4 cut(s) 74, 157, 352, 1057
MmeI TCCRAC 1 cut(s) 767
Mox20I TGGCCA 2 cut(s) 278, 828
MroI TCCGGA 1 cut(s) 638
MroXI GAANNNNTTC 1 cut(s) 577
MscI TGGCCA 2 cut(s) 278, 828
MseI TTAA 7 cut(s) 128, 435, 744, 852, 864, 1065, 1195
MslI CAYNNNNRTG 1 cut(s) 1185
Msp20I TGGCCA 2 cut(s) 278, 828
MspA1I CMGCKG 4 cut(s) 298, 623, 697, 893
MspI CCGG 2 cut(s) 474, 639
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 1 cut(s) 293
NdeI CATATG 1 cut(s) 988
NdeII GATC 1 cut(s) 205
NlaIII CATG 3 cut(s) 170, 266, 1190
NlaIV GGNNCC 3 cut(s) 472, 720, 978
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 3 cut(s) 196, 376, 1081
PceI AGGCCT 1 cut(s) 906
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 3 cut(s) 157, 333, 647
PkrI GCNGC 4 cut(s) 297, 300, 481, 696
PleI GAGTC 4 cut(s) 73, 157, 352, 1056
PpsI GAGTC 4 cut(s) 73, 157, 352, 1056
PpuMI RGGWCCY 1 cut(s) 976
Psp124BI GAGCTC 1 cut(s) 1140
Psp5II RGGWCCY 1 cut(s) 976
PspEI GGTNACC 1 cut(s) 376
PspFI CCCAGC 2 cut(s) 697, 762
PspN4I GGNNCC 3 cut(s) 472, 720, 978
PspPI GGNCC 5 cut(s) 139, 471, 719, 976, 1155
PspPPI RGGWCCY 1 cut(s) 976
PvuII CAGCTG 4 cut(s) 298, 623, 697, 893
RsaI GTAC 3 cut(s) 371, 443, 1152
RsaNI GTAC 3 cut(s) 370, 442, 1151
RseI CAYNNNNRTG 1 cut(s) 1185
SacI GAGCTC 1 cut(s) 1140
SaqAI TTAA 7 cut(s) 128, 435, 744, 852, 864, 1065, 1195
SatI GCNGC 4 cut(s) 296, 299, 480, 695
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 5 cut(s) 139, 471, 719, 976, 1155
SchI GAGTC 4 cut(s) 74, 157, 352, 1057
SduI GDGCHC 1 cut(s) 1140
SfaNI GCATC 5 cut(s) 49, 216, 949, 1067, 1121
SinI GGWCC 3 cut(s) 471, 976, 1155
SmiMI CAYNNNNRTG 1 cut(s) 1185
SmlI CTYRAG 2 cut(s) 362, 528
SmoI CTYRAG 2 cut(s) 362, 528
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 5 cut(s) 172, 519, 573, 849, 950
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 1 cut(s) 301
SspI AATATT 1 cut(s) 930
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 1140
StuI AGGCCT 1 cut(s) 906
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 4 cut(s) 428, 1010, 1099, 1155
TaiI ACGT 1 cut(s) 1088
TaqI TCGA 3 cut(s) 323, 607, 1143
TaqII GACCGA 1 cut(s) 861
TasI AATT 5 cut(s) 172, 519, 573, 849, 950
TatI WGTACW 2 cut(s) 369, 441
TfiI GAWTC 3 cut(s) 157, 333, 647
Tru1I TTAA 7 cut(s) 128, 435, 744, 852, 864, 1065, 1195
Tru9I TTAA 7 cut(s) 128, 435, 744, 852, 864, 1065, 1195
TscAI CASTG 4 cut(s) 433, 667, 1020, 1102
TseFI GTSAC 3 cut(s) 196, 376, 1081
TseI GCWGC 4 cut(s) 295, 298, 479, 694
Tsp45I GTSAC 3 cut(s) 196, 376, 1081
TspDTI ATGAA 4 cut(s) 166, 441, 834, 1078
TspRI CASTG 4 cut(s) 433, 667, 1020, 1102
VpaK11BI GGWCC 3 cut(s) 471, 976, 1155
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.