Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

11589908 .. 11590851

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCACACCATTCATTTTGTCGTCCAATGCCATTTTACAAAACCATTTCTTCCACTTTCACTCTCTCTACAGTTCTGGTCTTCTCCAGTTCTGCCTTGGTCGCTTTCCTCTTCAAAAACTCTTCTTCTTATACACACAAACCTGCCCTCATTGATGCCGAGCCCTCCGAAACCCCGTCCTTCTCCCGGCTCAAGTCAACGGTCATCAAGGTTACCCATGGCTTAATCCATCCGGTTGGTGGTCACTGTTGCCAAAAGGAAAGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

89

Amino Acids

9.83

Weight (kDa)

9.46

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	186, 239
AgsI	TTSAA	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	73
BccI	CCATC	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	96, 217
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 239
Bse1I	ACTGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	96, 217
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	186, 239
BseNI	ACTGG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	187, 233
BslI	CCNNNNNNNGG	2 cut(s)	186, 239
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	96, 217
BssT1I	CCWWGG	2 cut(s)	96, 217
Bst4CI	ACNGT	3 cut(s)	73, 202, 248
Bst6I	CTCTTC	2 cut(s)	116, 127
BstDSI	CCRYGG	1 cut(s)	217
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	151
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	3 cut(s)	163, 190, 222
CviKI_1	RGCY	3 cut(s)	163, 190, 222
Eam1104I	CTCTTC	2 cut(s)	116, 127
EarI	CTCTTC	2 cut(s)	116, 127
Eco130I	CCWWGG	2 cut(s)	96, 217
Eco24I	GRGCYC	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	96, 217
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	96, 217
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	132, 219
FatI	CATG	1 cut(s)	217
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	2 cut(s)	187, 233
Hin1II	CATG	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	187, 233
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	73, 202, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	62, 100, 156, 200, 246
LweI	GCATC	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	211, 242
MboII	GAAGA	5 cut(s)	42, 73, 103, 114, 117
MhlI	GDGCHC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	119, 158, 175
MseI	TTAA	1 cut(s)	224
MspI	CCGG	2 cut(s)	187, 233
MspR9I	CCNGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	217
NlaIII	CATG	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	242
PspEI	GGTNACC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	2 cut(s)	145, 213
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	96, 217
TaaI	ACNGT	3 cut(s)	73, 202, 248
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.