Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

63408627 .. 63410661

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG400500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGATAGGTTATTTTAACAACCCACAGGCCACCCAGCTAACTTTAGATAAAAATGGTTGGGTACATACTGGAAATCTTGGATACTTTGATGAAGGTGGCCAACTTTGTTTGGTTGACCGAATTAAAGAACTCATTAAGTATAAAGGTTTTCAGGTAGCACCAGCTGAACTTGAAGGCCTGTTAGTTTCTCACCCTGAAATATTAGACGCGATTGTCATCCCATTTCCTGATGCTGAAGCTGGTGAGGTCCCTGTTGCATATGTTGTGCGCTCGCCAAACAGTTCACTGACCGAAGAAGATATCAAGAGTTTTATAGCGAGTCAGGCTGCATCTTTTAAAAGACTGCGACAAGTGACTTTCATAAACACTGCCCCTAAGTCGGCATCAGGAAAAATCCTCAGAAGAGAGCTTATCGAGAAAGTACGTTCCAAAATATCGAACATACTGCACTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

6.84

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	57 - 132	2.1e-16	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	66, 426
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	4 cut(s)	40, 167, 242, 412
AluI	AGCT	4 cut(s)	40, 167, 242, 412
AoxI	GGCC	3 cut(s)	30, 100, 178
ApeKI	GCWGC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	185, 257
AvaII	GGWCC	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	1 cut(s)	430
BciVI	GTATCC	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	252
BmsI	GCATC	3 cut(s)	223, 341, 395
BsaBI	GATNNNNATC	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	218
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	32, 102, 180
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	32, 102, 180
BspANI	GGCC	3 cut(s)	32, 102, 180
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	378, 401
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	32, 102, 180
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	287, 369
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	65, 425
CviJI	RGCY	8 cut(s)	32, 40, 102, 167, 180, 242, 329, 412
CviKI_1	RGCY	8 cut(s)	32, 40, 102, 167, 180, 242, 329, 412
CviQI	GTAC	2 cut(s)	65, 425
DdeI	CTNAG	2 cut(s)	378, 401
DraI	TTTAAA	1 cut(s)	340
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	304
FaiI	YATR	7 cut(s)	69, 144, 262, 264, 317, 365, 446
FaqI	GGGAC	1 cut(s)	236
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	330
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	3 cut(s)	32, 102, 180
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	2 cut(s)	185, 257
Hpy166II	GTNNAC	2 cut(s)	118, 287
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	230, 307, 390, 418
Hpy8I	GTNNAC	2 cut(s)	118, 287
HpyAV	CCTTC	2 cut(s)	89, 170
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	260, 332, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	378, 401
HpySE526I	ACGT	1 cut(s)	427
HspAI	GCGC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	3 cut(s)	223, 341, 395
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	308, 311, 417
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	2 cut(s)	241, 410
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	5 cut(s)	18, 126, 138, 339, 460
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeI	CATATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	66, 426
RsaNI	GTAC	2 cut(s)	65, 425
SaqAI	TTAA	5 cut(s)	18, 126, 138, 339, 460
SatI	GCNGC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	331
SfaNI	GCATC	3 cut(s)	223, 341, 395
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	180
SspI	AATATT	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	417, 440
TaqII	GACCGA	2 cut(s)	135, 308
TasI	AATT	1 cut(s)	123
Tru1I	TTAA	5 cut(s)	18, 126, 138, 339, 460
Tru9I	TTAA	5 cut(s)	18, 126, 138, 339, 460
TscAI	CASTG	2 cut(s)	294, 376
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	108, 352
TspRI	CASTG	2 cut(s)	294, 376
VpaK11BI	GGWCC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.