Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

22630021 .. 22630385

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCCTATGTAGTTAGAAAGCCTGGAAGCAATATCAATGAGGCTGCAGTTATGGATTTTGTTGCAAAACAAGTTGTACCCTACAAGAAGATTCGACATGTATCATTTATCAACTCCATTCCAAAATCTCCAGCAGGAAAGATCTTGAGGAGGGAGCTCGTTAGTCATGCTCTATCTAGCCGTTCATCTAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

10.78

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	49
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	98, 167
CviJI	RGCY	5 cut(s)	5, 22, 44, 157, 180
CviKI_1	RGCY	5 cut(s)	5, 22, 44, 157, 180
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	101, 170
FaiI	YATR	5 cut(s)	9, 53, 99, 168, 196
FatI	CATG	2 cut(s)	97, 166
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	101, 170
HinfI	GANTC	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	47, 65
Hsp92II	CATG	2 cut(s)	101, 170
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	4 cut(s)	9, 36, 120, 144
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	177
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	191
MnlI	CCTC	3 cut(s)	34, 141, 144
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	101, 170
NspI	RCATGY	1 cut(s)	101
PciI	ACATGT	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	174
XceI	RCATGY	1 cut(s)	101
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.