Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293931.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

290 .. 712

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293931.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgttaagcaggctgatactgctgtgcttcgggtacaacaggccccagcaagggtgtgattctgactctgatcaagaagtggctagaaagatgcaccatttgtttctctgcgtgttgccaatgttccatgtctctggattggccatcatcacttacgcgcagctgcggaagggaaatgctgtgatttcgatgtccagattcaatctggagaaaattttgatgactgttgagaagtacaaggtcacccatttgtgggttgtgcctcctattatacttgctctgtcaaaggacagtgtggttaagaagtacaacctttcatctttaaagcattttgggtccggtgcagctcatctggggaaagagttgatggaggagtgtgcaaaaattattcctcaagctgtagttgctcaggtacttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

140

Amino Acids

15.71

Weight (kDa)

9.39

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	4 cut(s)	35, 236, 308, 414
AfiI	CCNNNNNNNGG	4 cut(s)	50, 51, 252, 253
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	3 cut(s)	163, 347, 398
AluI	AGCT	3 cut(s)	163, 347, 398
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	41, 141
ApeKI	GCWGC	3 cut(s)	160, 163, 344
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	42, 336
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	336
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	150, 172, 356
BccI	CCATC	2 cut(s)	152, 361
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	3 cut(s)	161, 164, 345
BlsI	GCNGC	3 cut(s)	162, 165, 346
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	42, 336
BmiI	GGNNCC	2 cut(s)	44, 337
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 51, 252, 253
BseLI	CCNNNNNNNGG	4 cut(s)	50, 51, 252, 253
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	150, 172, 356
BseYI	CCCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	43, 143
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	4 cut(s)	50, 51, 252, 253
BsmAI	GTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	43, 143
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	43, 143
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	44, 337
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	226, 293
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	408
BstEII	GGTNACC	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 404
BstPI	GGTNACC	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	150, 172, 356
BstXI	CCANNNNNNTGG	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	43, 143
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	42, 336
Csp6I	GTAC	4 cut(s)	34, 235, 307, 413
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	7 cut(s)	13, 43, 83, 143, 163, 347, 398
CviKI_1	RGCY	7 cut(s)	13, 43, 83, 143, 163, 347, 398
CviQI	GTAC	4 cut(s)	34, 235, 307, 413
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	336
Eco91I	GGTNACC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	241
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	129, 272
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	3 cut(s)	161, 164, 345
Fsp4HI	GCNGC	3 cut(s)	161, 164, 345
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	161, 164, 345
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	43, 143
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	3 cut(s)	59, 65, 198
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	64, 70
Hpy188III	TCNNGA	4 cut(s)	74, 135, 195, 206
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	226, 293
HpyCH4V	TGCA	3 cut(s)	94, 344, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 404
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	25, 59, 120, 191, 208, 338, 352, 395
Lsp1109I	GCAGC	3 cut(s)	150, 172, 356
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	213, 384
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	273, 364, 402
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	4 cut(s)	5, 300, 323, 417
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	19, 404
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	44, 337
NmuCI	GTSAC	1 cut(s)	241
PfeI	GAWTC	2 cut(s)	59, 198
PkrI	GCNGC	3 cut(s)	162, 165, 346
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspEI	GGTNACC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	44, 337
PspPI	GGNCC	2 cut(s)	42, 336
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	4 cut(s)	35, 236, 308, 414
RsaNI	GTAC	4 cut(s)	34, 235, 307, 413
SaqAI	TTAA	4 cut(s)	5, 300, 323, 417
SatI	GCNGC	3 cut(s)	161, 164, 345
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	42, 336
SchI	GAGTC	1 cut(s)	59
SetI	ASST	6 cut(s)	165, 243, 315, 349, 400, 414
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	213, 384
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	226, 293
TaqI	TCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	213, 384
TatI	WGTACW	2 cut(s)	234, 306
TfiI	GAWTC	2 cut(s)	59, 198
Tru1I	TTAA	4 cut(s)	5, 300, 323, 417
Tru9I	TTAA	4 cut(s)	5, 300, 323, 417
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	160, 163, 344
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.