Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

33402382 .. 33403747

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTACTTCTCCGATTTGATCAGAATATCAGACACTATTTCCGATTTACCTGCGGTTAGTGTCACACAGAGTGACGTGACCGCGCTGTTGTACTCGTCAGGTACGACCGGGAAGAGCAAGGGAGTGATTCTAACTCATCGGAACTTCATTACGGCGTCGTTGATGGTGACGGCGGACCAGGACCGTTACGGGGAGCCGAAACACGTGTTTTTGTGTTTTGTTCCCCTGTTCCACATAATGGGGCTGTCGGTGATTCTGTACTCGCAGCTCAGGCGGGGCAACGCCGTCGTTTCGATGGCCAAGTTTGATATTAACAAGGCGTTGAAGGCGGTGGAGGAGTACAGGGTCACTCAGTTGTTCGTCGTTCCGCCGGTGATGATTGCACTGGCGAAGGAGAGTGTGGTTAACAAGCACGACATGTCGTCGGTGAAGTTAATCGTGTCTGGTGCGGCACCGCTTGGAAAAGAGTTGATGGAGGAGACGGCCAAGAATATTCCTCAGGCTGCGATTGTTCAGGGATATGGTATGACGGAAACTTGTGGAATAATTTCGCTAGAGAATCCGAAAGAAGGATCTCGATATTCCGATTCAACCGGCATTCTTGCTCCTGGAATGGAATCTCGGATAGTTAGTGCAGATACCCTCAAGGCTCTTCCACCTAATCAATTGGGAGAAATATGGGTGAGAGGGCCAAATATAATGCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

236

Amino Acids

25.61

Weight (kDa)

6.91

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	17 - 236	5.9e-59	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccII	CGCG	1 cut(s)	83
AciI	CCGC	8 cut(s)	53, 81, 173, 274, 329, 368, 449, 455
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	2 cut(s)	297, 483
AcvI	CACGTG	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	71
AfaI	GTAC	5 cut(s)	5, 92, 103, 260, 341
AfiI	CCNNNNNNNGG	3 cut(s)	190, 238, 569
AflIII	ACRYGT	3 cut(s)	202, 204, 417
AgsI	TTSAA	2 cut(s)	325, 591
AhdI	GACNNNNNGTC	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	177, 607
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	580
AoxI	GGCC	3 cut(s)	297, 483, 689
ApeKI	GCWGC	2 cut(s)	265, 503
Asp700I	GAANNNNTTC	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	175, 181, 689
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	5 cut(s)	178, 262, 385, 439, 694
AvaII	GGWCC	2 cut(s)	175, 181
AxyI	CCTNAGG	1 cut(s)	498
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	451
BbrPI	CACGTG	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	277, 490
BccI	CCATC	3 cut(s)	157, 289, 466
BceAI	ACGGC	4 cut(s)	168, 186, 269, 498
BcgI	CGANNNNNNTGC	4 cut(s)	32, 66, 268, 302
BciT130I	CCWGG	2 cut(s)	179, 609
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	266, 450, 504
BlsI	GCNGC	3 cut(s)	267, 451, 505
Bme1390I	CCNGG	3 cut(s)	109, 179, 609
Bme18I	GGWCC	2 cut(s)	175, 181
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	175, 181, 689
BmiI	GGNNCC	2 cut(s)	195, 453
BmrFI	CCNGG	3 cut(s)	109, 179, 609
Bpu10I	CCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 238, 569
Bse118I	RCCGGY	2 cut(s)	370, 593
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	179, 609
BseLI	CCNNNNNNNGG	3 cut(s)	190, 238, 569
BseMII	CTCAG	3 cut(s)	283, 365, 512
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	350, 491
BseXI	GCAGC	2 cut(s)	277, 490
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	299, 485, 691
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	108, 371, 594
BslI	CCNNNNNNNGG	3 cut(s)	190, 238, 569
BsmAI	GTCTC	1 cut(s)	473
BsmBI	CGTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	299, 485, 691
Bsp143I	GATC	2 cut(s)	18, 572
BspACI	CCGC	8 cut(s)	53, 81, 173, 274, 329, 368, 449, 455
BspANI	GGCC	3 cut(s)	299, 485, 691
BspCNI	CTCAG	3 cut(s)	282, 364, 511
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	195, 453
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	580
BspQI	GCTCTTC	2 cut(s)	107, 657
BspT107I	GGYRCC	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	370, 593
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	370, 593
BssMI	GATC	2 cut(s)	18, 572
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	179, 609
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	107, 657
BstACI	GRCGYC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	269, 351, 498
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	21, 575
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	18, 572
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 326
BstNI	CCWGG	2 cut(s)	179, 609
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	107, 177, 607
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	277, 490
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	299, 485, 691
BtrI	CACGTC	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	370, 593
Cfr13I	GGNCC	3 cut(s)	175, 181, 689
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	5 cut(s)	4, 91, 102, 259, 340
CviAII	CATG	1 cut(s)	418
CviJI	RGCY	8 cut(s)	196, 244, 268, 299, 485, 503, 650, 691
CviKI_1	RGCY	8 cut(s)	196, 244, 268, 299, 485, 503, 650, 691
CviQI	GTAC	5 cut(s)	4, 91, 102, 259, 340
DdeI	CTNAG	3 cut(s)	269, 351, 498
DpnI	GATC	2 cut(s)	20, 574
DpnII	GATC	2 cut(s)	18, 572
DraIII	CACNNNGTG	1 cut(s)	71
DriI	GACNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	297, 483
Eam1104I	CTCTTC	2 cut(s)	107, 657
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	2 cut(s)	107, 657
EciI	GGCGGA	2 cut(s)	188, 357
Eco47I	GGWCC	2 cut(s)	175, 181
Eco72I	CACGTG	1 cut(s)	205
Eco81I	CCTNAGG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	177, 607
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	1 cut(s)	421
FaiI	YATR	6 cut(s)	236, 419, 522, 527, 679, 698
FatI	CATG	1 cut(s)	417
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	266, 450, 504
Fsp4HI	GCNGC	3 cut(s)	266, 450, 504
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	266, 450, 504
HaeIII	GGCC	3 cut(s)	299, 485, 691
HapII	CCGG	3 cut(s)	108, 371, 594
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	127, 253, 559, 587, 617
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	3 cut(s)	108, 371, 594
HphI	GGTGA	5 cut(s)	178, 262, 385, 439, 694
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	8 cut(s)	13, 23, 31, 43, 141, 564, 586, 624
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	4 cut(s)	160, 290, 365, 427
HpyAV	CCTTC	3 cut(s)	319, 385, 563
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	75, 204
HpyCH4V	TGCA	3 cut(s)	383, 635, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 326
HpyF3I	CTNAG	3 cut(s)	269, 351, 498
HpySE526I	ACGT	2 cut(s)	75, 204
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	18, 572
LguI	GCTCTTC	2 cut(s)	107, 657
LmnI	GCTCC	2 cut(s)	193, 610
Lsp1109I	GCAGC	2 cut(s)	277, 490
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	2 cut(s)	75, 204
MaeIII	GTNAC	6 cut(s)	61, 71, 76, 166, 185, 346
MalI	GATC	2 cut(s)	20, 574
MboI	GATC	2 cut(s)	18, 572
MboII	GAAGA	2 cut(s)	124, 644
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	1 cut(s)	572
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	546, 665
MluNI	TGGCCA	1 cut(s)	299
MnlI	CCTC	5 cut(s)	328, 469, 507, 653, 680
Mox20I	TGGCCA	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	3 cut(s)	312, 405, 434
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	3 cut(s)	108, 371, 594
MspR9I	CCNGG	3 cut(s)	109, 179, 609
MunI	CAATTG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	179, 609
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	271, 326
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	18, 572
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	2 cut(s)	195, 453
NmuCI	GTSAC	5 cut(s)	61, 71, 76, 166, 346
NspI	RCATGY	1 cut(s)	421
PciI	ACATGT	1 cut(s)	417
PciSI	GCTCTTC	2 cut(s)	107, 657
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	127, 253, 559, 587, 617
PflMI	CCANNNNNTGG	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	267, 451, 505
PmaCI	CACGTG	1 cut(s)	205
PmlI	CACGTG	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	205
PscI	ACATGT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	177, 607
PspCI	CACGTG	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	177, 607
PspN4I	GGNNCC	2 cut(s)	195, 453
PspPI	GGNCC	3 cut(s)	175, 181, 689
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	5 cut(s)	5, 92, 103, 260, 341
RsaNI	GTAC	5 cut(s)	4, 91, 102, 259, 340
SapI	GCTCTTC	2 cut(s)	107, 657
SaqAI	TTAA	3 cut(s)	312, 405, 434
SatI	GCNGC	3 cut(s)	266, 450, 504
Sau3AI	GATC	2 cut(s)	18, 572
Sau96I	GGNCC	3 cut(s)	175, 181, 689
ScrFI	CCNGG	3 cut(s)	109, 179, 609
SetI	ASST	7 cut(s)	52, 78, 103, 207, 270, 661, 709
SgrAI	CRCCGGYG	1 cut(s)	370
SinI	GGWCC	2 cut(s)	175, 181
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	2 cut(s)	546, 665
SsiI	CCGC	8 cut(s)	53, 81, 173, 274, 329, 368, 449, 455
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	3 cut(s)	107, 177, 607
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	78, 207
TaqI	TCGA	2 cut(s)	293, 577
TasI	AATT	2 cut(s)	546, 665
TatI	WGTACW	4 cut(s)	3, 90, 258, 339
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	5 cut(s)	127, 253, 559, 587, 617
Tru1I	TTAA	3 cut(s)	312, 405, 434
Tru9I	TTAA	3 cut(s)	312, 405, 434
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	5 cut(s)	61, 71, 76, 166, 346
TseI	GCWGC	2 cut(s)	265, 503
Tsp45I	GTSAC	5 cut(s)	61, 71, 76, 166, 346
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	175, 181
XceI	RCATGY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.