MD00G1033100.v1.1

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
5755459 .. 5758017
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1033100.v1.1.491

Sequence Viewer

Length: 843 bp
ATGGCGAGATTTGATCTCGAGAAGACTTTGATGGCTGTTGAGAAGTATAAGGTTACACACTTGTGGGTTGTGCCTCCTATAGTGCTTGCCCTGGCGAAAAACAGTATGGTTAAGAAGTTTAACCTTTCGTCGTTGAAGCATATCTGTTCAGGGGCAGCTCCTATGGGGAAAGAGTTGATGGAGGAGTGTGCAAAAAAATTTCCTCAAGGTGTAGTAGCTCAGGGATATGGTATGACAGAAAGCTGTGGAATTATTTCTGTGGACTATACGCTGGCAGGGACTCGACATACTGGTTCAACTGGTATGCTTGTTTCGGGAATTGAATGTCAGATAGTCAGTATAGATACACGGAAGCCTCAACCTCCTAAACAGTTGGGAGAGATATGGGTTAGGGGCCCTAGTATGATGGCTGGGTATTTCAACAACCCGGAGGCGACCAACGAGACTATAGACAGAAATGGTTGGTTACATACAGGAGATCTTGGATACATTGATGAAAAGGGACTACTTTATGTAGTTGATCGAATCAAAGAGCTTATTAAGTATAAAGGTTTCCAGGTGGCACCAGCTGAACTTGAAGGGCTGCTAGTTTCTCACCCTGAAATATTAGATTCAGTTGTCATCCCGCTTCCTGATGCTGAAGCTGGTGAGGTCCCCGTTGCATATTGCGTACGCACGCCAAATAGTTCTCTGACAGAAGAAGATGTCAAGAGCTTTACTGCTAATCAGGTTGCATCTTTCAAACGACTACGAAGAGTAACATTCATAAAGAGTGTCCCCAAGTCAGCATCAGGCAAAATCCTCAGAAGAGAGCTCATCGAGAAAGTGCGGTCGAAAATATGA

Protein Analysis

281

Amino Acids

30.9

Weight (kDa)

8.83

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 7 - 140 3.8e-33 AMP-binding enzyme
AMP-binding_C PF13193 191 - 266 6.6e-15 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05160
fragaria_vesca FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis pycom10g19750 pycom11g11900
rosa_chinensis RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AciI CCGC 2 cut(s) 626, 829
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 1 cut(s) 672
AgsI TTSAA 6 cut(s) 136, 297, 323, 421, 578, 742
AjnI CCWGG 2 cut(s) 90, 555
AleI CACNNNNGTG 1 cut(s) 61
AluBI AGCT 8 cut(s) 158, 218, 243, 535, 569, 644, 714, 814
AluI AGCT 8 cut(s) 158, 218, 243, 535, 569, 644, 714, 814
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 394
ApaI GGGCCC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 155, 583
ApoI RAATTY 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 394, 395, 652
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 587, 659
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 2 cut(s) 398, 816
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 167, 570
BccI CCATC 3 cut(s) 25, 172, 400
BciT130I CCWGG 2 cut(s) 92, 557
BciVI GTATCC 1 cut(s) 479
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 399, 587
BfmI CTRYAG 2 cut(s) 78, 447
BfuI GTATCC 1 cut(s) 479
BglII AGATCT 1 cut(s) 478
BisI GCNGC 2 cut(s) 156, 584
BlsI GCNGC 2 cut(s) 157, 585
Bme1390I CCNGG 3 cut(s) 92, 428, 557
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 394, 395, 652
BmiI GGNNCC 4 cut(s) 395, 396, 564, 654
BmrFI CCNGG 3 cut(s) 92, 428, 557
BmsI GCATC 3 cut(s) 625, 743, 797
BpiI GAAGAC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 295, 304
BseBI CCWGG 2 cut(s) 92, 557
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 621
BseMII CTCAG 2 cut(s) 233, 817
BseNI ACTGG 2 cut(s) 295, 304
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 2 cut(s) 167, 570
BseYI CCCAGC 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 833
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 562
BsiEI CGRYCG 1 cut(s) 833
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 428
BsiWI CGTACG 1 cut(s) 670
BslFI GGGAC 4 cut(s) 292, 516, 638, 761
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 4 cut(s) 292, 516, 638, 761
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 17
Bsp120I GGGCCC 1 cut(s) 394
Bsp1286I GDGCHC 2 cut(s) 398, 816
Bsp143I GATC 3 cut(s) 13, 478, 520
BspACI CCGC 2 cut(s) 626, 829
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 232, 816
BspLI GGNNCC 4 cut(s) 395, 396, 564, 654
BspT107I GGYRCC 1 cut(s) 562
BsrI ACTGG 2 cut(s) 295, 304
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 13, 478, 520
Bst2UI CCWGG 2 cut(s) 92, 557
Bst4CI ACNGT 2 cut(s) 104, 372
Bst6I CTCTTC 2 cut(s) 748, 802
BstC8I GCNNGC 3 cut(s) 87, 273, 677
BstDEI CTNAG 2 cut(s) 219, 803
BstF5I GGATG 1 cut(s) 621
BstKTI GATC 3 cut(s) 16, 481, 523
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 13, 478, 520
BstMCI CGRYCG 1 cut(s) 833
BstNI CCWGG 2 cut(s) 92, 557
BstSCI CCNGG 3 cut(s) 90, 426, 555
BstSFI CTRYAG 2 cut(s) 78, 447
BstSLI GKGCMC 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 167, 570
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BsuI GTATCC 1 cut(s) 479
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 621
Cac8I GCNNGC 3 cut(s) 87, 273, 677
Cfr13I GGNCC 3 cut(s) 394, 395, 652
Csp6I GTAC 1 cut(s) 671
CviQI GTAC 1 cut(s) 671
DdeI CTNAG 2 cut(s) 219, 803
DpnI GATC 3 cut(s) 15, 480, 522
DpnII GATC 3 cut(s) 13, 478, 520
Eam1104I CTCTTC 2 cut(s) 748, 802
EarI CTCTTC 2 cut(s) 748, 802
Ecl136II GAGCTC 1 cut(s) 814
Eco24I GRGCYC 2 cut(s) 398, 816
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 814
EcoO109I RGGNCCY 3 cut(s) 394, 395, 652
EcoRII CCWGG 2 cut(s) 90, 555
EcoT38I GRGCYC 2 cut(s) 398, 816
FaqI GGGAC 4 cut(s) 292, 516, 638, 761
FauI CCCGC 1 cut(s) 633
Fnu4HI GCNGC 2 cut(s) 156, 584
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 2 cut(s) 398, 816
Fsp4HI GCNGC 2 cut(s) 156, 584
FspBI CTAG 2 cut(s) 399, 587
GluI GCNGC 2 cut(s) 156, 584
GsaI CCCAGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 428
HinfI GANTC 3 cut(s) 280, 525, 611
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 587, 659
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 330, 693, 806
Hpy188III TCNNGA 6 cut(s) 17, 19, 315, 632, 709, 820
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 2 cut(s) 104, 372
HpyCH4V TGCA 3 cut(s) 191, 662, 734
HpyF3I CTNAG 2 cut(s) 219, 803
Kzo9I GATC 3 cut(s) 13, 478, 520
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 167, 570
LweI GCATC 3 cut(s) 625, 743, 797
MaeI CTAG 2 cut(s) 399, 587
MaeIII GTNAC 3 cut(s) 52, 465, 757
MalI GATC 3 cut(s) 15, 480, 522
MboI GATC 3 cut(s) 13, 478, 520
MboII GAAGA 5 cut(s) 34, 710, 713, 765, 819
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 2 cut(s) 398, 816
MluCI AATT 3 cut(s) 197, 249, 318
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 8 cut(s) 84, 175, 213, 366, 372, 424, 643, 812
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 3 cut(s) 111, 120, 540
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 3 cut(s) 92, 428, 557
MvaI CCWGG 2 cut(s) 92, 557
NciI CCSGG 1 cut(s) 428
NdeII GATC 3 cut(s) 13, 478, 520
NlaIV GGNNCC 4 cut(s) 395, 396, 564, 654
OliI CACNNNNGTG 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 525, 611
Pfl23II CGTACG 1 cut(s) 670
PkrI GCNGC 2 cut(s) 157, 585
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 90, 555
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 90, 555
PspLI CGTACG 1 cut(s) 670
PspN4I GGNNCC 4 cut(s) 395, 396, 564, 654
PspOMI GGGCCC 1 cut(s) 394
PspPI GGNCC 3 cut(s) 394, 395, 652
PspPPI RGGWCCY 1 cut(s) 652
PsuI RGATCY 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 1 cut(s) 672
RsaNI GTAC 1 cut(s) 671
RseI CAYNNNNRTG 1 cut(s) 61
SacI GAGCTC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 111, 120, 540
SatI GCNGC 2 cut(s) 156, 584
Sau3AI GATC 3 cut(s) 13, 478, 520
Sau96I GGNCC 3 cut(s) 394, 395, 652
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 3 cut(s) 92, 428, 557
SduI GDGCHC 2 cut(s) 398, 816
SfaNI GCATC 3 cut(s) 625, 743, 797
SfcI CTRYAG 2 cut(s) 78, 447
Sfr274I CTCGAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 652
SlaI CTCGAG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 17, 204
SmoI CTYRAG 2 cut(s) 17, 204
Sse9I AATT 3 cut(s) 197, 249, 318
SsiI CCGC 2 cut(s) 626, 829
SspI AATATT 1 cut(s) 606
SspMI CTAG 2 cut(s) 399, 587
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 3 cut(s) 90, 426, 555
TaaI ACNGT 2 cut(s) 104, 372
TaqI TCGA 5 cut(s) 18, 283, 523, 819, 833
TasI AATT 3 cut(s) 197, 249, 318
TfiI GAWTC 2 cut(s) 525, 611
Tru1I TTAA 3 cut(s) 111, 120, 540
Tru9I TTAA 3 cut(s) 111, 120, 540
TseI GCWGC 2 cut(s) 155, 583
TspDTI ATGAA 2 cut(s) 510, 754
TspGWI ACGGA 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 399, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.