Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8225990.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 466

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8225990.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 263 bp

gcctgttagtttctcaccctgaaatattagacgctgttgtcatcccatttcctgatgctgaagctggtgaggtccctgttgcatatgttgtgcgctcaccgaacagttcactgaccgaagaagatatcaagagttttatagcgagtcaggttgcatctttcaaaagactgcgacgagtgacattcgtaaacactgtccccaagtcggcatcaggaaaaatcctcagaaaagagctcatcgagaaagtacggtccaaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

86

Amino Acids

9.49

Weight (kDa)

9.52

Isoelectric Point (pI)

67.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	162
AluBI	AGCT	2 cut(s)	64, 234
AluI	AGCT	2 cut(s)	64, 234
Alw21I	GWGCWC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	72, 251
AsuHPI	GGTGA	3 cut(s)	7, 79, 89
AvaII	GGWCC	2 cut(s)	72, 251
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	72, 251
BmgT120I	GGNCC	2 cut(s)	72, 251
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	3 cut(s)	45, 163, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	58, 181
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	58, 181
Bsp1286I	GDGCHC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	106, 195, 251
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	109, 191
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	72, 251
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	2 cut(s)	64, 234
CviKI_1	RGCY	2 cut(s)	64, 234
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	72, 251
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	236
FaiI	YATR	4 cut(s)	84, 86, 139, 261
FaqI	GGGAC	2 cut(s)	58, 181
FauNDI	CATATG	1 cut(s)	84
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	236
GlaI	GCGC	1 cut(s)	94
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	3 cut(s)	7, 79, 89
Hpy166II	GTNNAC	2 cut(s)	109, 189
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	52, 129, 212, 240
Hpy8I	GTNNAC	2 cut(s)	109, 189
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	106, 195, 251
HpyCH4V	TGCA	2 cut(s)	82, 154
HpyF3I	CTNAG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	93
LpnPI	CCDG	7 cut(s)	16, 32, 50, 65, 89, 133, 197
LweI	GCATC	3 cut(s)	45, 163, 217
MaeIII	GTNAC	1 cut(s)	177
MboII	GAAGA	2 cut(s)	130, 133
MhlI	GDGCHC	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	63, 232
NdeI	CATATG	1 cut(s)	84
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	72, 251
PspPPI	RGGWCCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	236
Sau96I	GGNCC	2 cut(s)	72, 251
SchI	GAGTC	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	4 cut(s)	66, 74, 152, 236
SfaNI	GCATC	3 cut(s)	45, 163, 217
SinI	GGWCC	2 cut(s)	72, 251
SspI	AATATT	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	236
TaaI	ACNGT	3 cut(s)	106, 195, 251
TaqI	TCGA	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	130
TscAI	CASTG	2 cut(s)	116, 198
TseFI	GTSAC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	177
TspRI	CASTG	2 cut(s)	116, 198
VpaK11BI	GGWCC	2 cut(s)	72, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.