Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041005.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1100

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041005.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ttatctgggcctgtctcggatttccctagtgtaaatgttaagcagactgatactgctgcgctgttgtactcttcaggtacaacaggcctcagcaaaggtgtgattctgactcatgggaatttcattgcttcctctctgatgatcacacaagatcaagaagtggctggagagatgcaccatgtgtttctctgtgtgttgccaatgttccatatgtttggattggccgtcatcacttacgcgcagctgcgaaggggaaatgctgtgatttcgatgtccagattcaatctggagaagattttgatgactgttgagaagtacaaggtcacccatttgtgggttgtgcctcctattatacttgctctgtcaaaggacagtgtggttaagaagtacaatctttcatctttgaagcatattgggtctggtgcagctcctctggggaaagagttgatggaggagtgtgcaaaaattattcctcaaggtgtagttattcagggttatggtatgacagaaacctgtggaattatttcaattgagaattcactagtaggacctcgacattgtggttcagctggcactcttgtttctggagttgaatctcagatagtcagtgtagatacactgcagcctctccctccaaagcagttgggggagatatgggttagggggcctagtatgatgatgggtaattgcaatttcaatttggttgttgttaatcttagagaaaagaaagaacaattattctgcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

249

Amino Acids

26.99

Weight (kDa)

8.23

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	118, 535
AcuI	CTGAAG	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	4 cut(s)	68, 79, 317, 389
AfiI	CCNNNNNNNGG	2 cut(s)	333, 334
AgsI	TTSAA	5 cut(s)	283, 406, 528, 593, 697
AhlI	ACTAGT	1 cut(s)	541
AluBI	AGCT	3 cut(s)	244, 428, 569
AluI	AGCT	3 cut(s)	244, 428, 569
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	4 cut(s)	8, 85, 222, 665
ApeKI	GCWGC	5 cut(s)	56, 241, 244, 425, 622
ApoI	RAATTY	2 cut(s)	118, 535
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	2 cut(s)	61, 241
AspS9I	GGNCC	3 cut(s)	8, 548, 665
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	548
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	5 cut(s)	43, 231, 253, 437, 634
BccI	CCATC	2 cut(s)	442, 673
BceAI	ACGGC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	19
BcuI	ACTAGT	1 cut(s)	541
BfaI	CTAG	3 cut(s)	27, 542, 669
BfmI	CTRYAG	1 cut(s)	620
BisI	GCNGC	5 cut(s)	57, 242, 245, 426, 623
BlsI	GCNGC	5 cut(s)	58, 243, 246, 427, 624
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	8, 548, 665
BmiI	GGNNCC	1 cut(s)	666
BmsI	GCATC	1 cut(s)	162
BpmI	CTGGAG	3 cut(s)	186, 308, 606
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 334
Bse3DI	GCAATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	333, 334
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	103, 611
BseRI	GAGGAG	2 cut(s)	420, 467
BseXI	GCAGC	5 cut(s)	43, 231, 253, 437, 634
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	4 cut(s)	10, 87, 224, 667
BslI	CCNNNNNNNGG	2 cut(s)	333, 334
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	10, 87, 224, 667
Bsp143I	GATC	2 cut(s)	141, 151
BspANI	GGCC	4 cut(s)	10, 87, 224, 667
BspCNI	CTCAG	2 cut(s)	102, 610
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	666
BspMAI	CTGCAG	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	123
BssMI	GATC	2 cut(s)	141, 151
Bst4CI	ACNGT	2 cut(s)	307, 374
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	3 cut(s)	89, 597, 716
BstEII	GGTNACC	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	61, 241
BstKTI	GATC	2 cut(s)	144, 154
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	141, 151
BstPI	GGTNACC	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	620
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	5 cut(s)	43, 231, 253, 437, 634
BstXI	CCANNNNNNTGG	1 cut(s)	215
BsuRI	GGCC	4 cut(s)	10, 87, 224, 667
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	3 cut(s)	379, 613, 617
Cac8I	GCNNGC	1 cut(s)	571
CfoI	GCGC	2 cut(s)	61, 241
Cfr13I	GGNCC	3 cut(s)	8, 548, 665
Csp6I	GTAC	4 cut(s)	67, 78, 316, 388
CviAII	CATG	2 cut(s)	113, 179
CviJI	RGCY	9 cut(s)	10, 87, 164, 224, 244, 428, 569, 625, 667
CviKI_1	RGCY	9 cut(s)	10, 87, 164, 224, 244, 428, 569, 625, 667
CviQI	GTAC	4 cut(s)	67, 78, 316, 388
DdeI	CTNAG	3 cut(s)	89, 597, 716
DpnI	GATC	2 cut(s)	143, 153
DpnII	GATC	2 cut(s)	141, 151
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	322
EcoO109I	RGGNCCY	2 cut(s)	548, 665
EcoO65I	GGTNACC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	535
FaeI	CATG	2 cut(s)	116, 182
FatI	CATG	2 cut(s)	112, 178
FauNDI	CATATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	57, 242, 245, 426, 623
Fsp4HI	GCNGC	5 cut(s)	57, 242, 245, 426, 623
FspBI	CTAG	3 cut(s)	27, 542, 669
GlaI	GCGC	2 cut(s)	60, 240
GluI	GCNGC	5 cut(s)	57, 242, 245, 426, 623
GsuI	CTGGAG	3 cut(s)	186, 308, 606
HaeIII	GGCC	4 cut(s)	10, 87, 224, 667
HhaI	GCGC	2 cut(s)	61, 241
Hin1II	CATG	2 cut(s)	116, 182
Hin6I	GCGC	2 cut(s)	59, 239
HinP1I	GCGC	2 cut(s)	59, 239
HinfI	GANTC	4 cut(s)	103, 109, 279, 593
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	4 cut(s)	19, 108, 138, 600
Hpy188III	TCNNGA	4 cut(s)	155, 276, 287, 585
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	307, 374
HpyCH4V	TGCA	6 cut(s)	175, 425, 461, 622, 690, 744
HpyF3I	CTNAG	3 cut(s)	89, 597, 716
Hsp92II	CATG	2 cut(s)	116, 182
HspAI	GCGC	2 cut(s)	59, 239
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 151
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	5 cut(s)	43, 231, 253, 437, 634
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	3 cut(s)	27, 542, 669
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	143, 153
MboI	GATC	2 cut(s)	141, 151
MboII	GAAGA	2 cut(s)	63, 304
MfeI	CAATTG	1 cut(s)	528
MluCI	AATT	9 cut(s)	118, 465, 519, 528, 535, 685, 691, 697, 734
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	9 cut(s)	98, 142, 354, 441, 445, 483, 561, 636, 642
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	3 cut(s)	39, 381, 711
MspA1I	CMGCKG	2 cut(s)	244, 569
MunI	CAATTG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	2 cut(s)	141, 151
NlaIII	CATG	2 cut(s)	116, 182
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	3 cut(s)	103, 279, 593
PkrI	GCNGC	5 cut(s)	58, 243, 246, 427, 624
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	548
PspEI	GGTNACC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	3 cut(s)	8, 548, 665
PspPPI	RGGWCCY	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	624
PvuII	CAGCTG	2 cut(s)	244, 569
RsaI	GTAC	4 cut(s)	68, 79, 317, 389
RsaNI	GTAC	4 cut(s)	67, 78, 316, 388
SaqAI	TTAA	3 cut(s)	39, 381, 711
SatI	GCNGC	5 cut(s)	57, 242, 245, 426, 623
Sau3AI	GATC	2 cut(s)	141, 151
Sau96I	GGNCC	3 cut(s)	8, 548, 665
SchI	GAGTC	1 cut(s)	103
SetI	ASST	9 cut(s)	79, 100, 246, 324, 430, 481, 515, 553, 571
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SpeI	ACTAGT	1 cut(s)	541
Sse9I	AATT	9 cut(s)	118, 465, 519, 528, 535, 685, 691, 697, 734
SseBI	AGGCCT	1 cut(s)	87
SspMI	CTAG	3 cut(s)	27, 542, 669
StuI	AGGCCT	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	307, 374
TaqI	TCGA	2 cut(s)	269, 553
TasI	AATT	9 cut(s)	118, 465, 519, 528, 535, 685, 691, 697, 734
TatI	WGTACW	3 cut(s)	66, 315, 387
TfiI	GAWTC	3 cut(s)	103, 279, 593
Tru1I	TTAA	3 cut(s)	39, 381, 711
Tru9I	TTAA	3 cut(s)	39, 381, 711
TscAI	CASTG	3 cut(s)	379, 613, 624
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	5 cut(s)	56, 241, 244, 425, 622
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	112, 387
TspRI	CASTG	3 cut(s)	379, 613, 624
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	118, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	3 cut(s)	27, 542, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.