Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

35754464 .. 35755206

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0306100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATCTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAAACAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCACTCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGAAACGTTTTCGGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

160

Amino Acids

17.89

Weight (kDa)

9.07

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	9.8e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AclI	AACGTT	1 cut(s)	466
AclWI	GGATC	8 cut(s)	105, 165, 354, 367, 402, 415, 435, 448
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	2 cut(s)	115, 352
AfiI	CCNNNNNNNGG	2 cut(s)	353, 437
AhlI	ACTAGT	2 cut(s)	338, 386
AjnI	CCWGG	2 cut(s)	116, 346
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	3 cut(s)	31, 223, 434
AluI	AGCT	3 cut(s)	31, 223, 434
Alw21I	GWGCWC	2 cut(s)	201, 311
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	307
AlwI	GGATC	8 cut(s)	105, 165, 354, 367, 402, 415, 435, 448
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	428
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	74, 317
ApoI	RAATTY	1 cut(s)	476
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	381, 428
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	3 cut(s)	188, 311, 330
BamHI	GGATCC	3 cut(s)	359, 407, 440
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	201, 311
BbvI	GCAGC	2 cut(s)	86, 304
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	118, 348
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	2 cut(s)	338, 386
BfaI	CTAG	2 cut(s)	339, 387
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	2 cut(s)	75, 318
BlsI	GCNGC	2 cut(s)	76, 319
Bme1390I	CCNGG	3 cut(s)	79, 118, 348
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	381, 428
BmiI	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
BmrFI	CCNGG	3 cut(s)	79, 118, 348
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	2 cut(s)	117, 203
BpuEI	CTTGAG	2 cut(s)	137, 306
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 437
Bse1I	ACTGG	2 cut(s)	358, 400
BseBI	CCWGG	2 cut(s)	118, 348
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	353, 437
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	358, 400
BseSI	GKGCMC	3 cut(s)	188, 311, 330
BseXI	GCAGC	2 cut(s)	86, 304
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	201, 311
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	353, 437
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	5 cut(s)	188, 201, 286, 311, 330
Bsp143I	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
BspPI	GGATC	8 cut(s)	105, 165, 354, 367, 402, 415, 435, 448
BsrI	ACTGG	2 cut(s)	358, 400
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	118, 348
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	7 cut(s)	100, 139, 160, 213, 362, 410, 443
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
BstNI	CCWGG	2 cut(s)	118, 348
BstSCI	CCNGG	3 cut(s)	77, 116, 346
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	3 cut(s)	188, 311, 330
BstV1I	GCAGC	2 cut(s)	86, 304
BstX2I	RGATCY	6 cut(s)	97, 157, 210, 359, 407, 440
BstYI	RGATCY	6 cut(s)	97, 157, 210, 359, 407, 440
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	381, 428
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	114, 351
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	8 cut(s)	31, 77, 111, 223, 284, 317, 430, 434
CviKI_1	RGCY	8 cut(s)	31, 77, 111, 223, 284, 317, 430, 434
CviQI	GTAC	2 cut(s)	114, 351
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	7 cut(s)	99, 138, 159, 212, 361, 409, 442
DpnII	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	116, 346
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	334
FaiI	YATR	2 cut(s)	234, 332
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	75, 318
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	75, 318
FspBI	CTAG	2 cut(s)	339, 387
GluI	GCNGC	2 cut(s)	75, 318
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	117, 203
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	309, 384
Hpy188I	TCNGA	2 cut(s)	474, 482
Hpy188III	TCNNGA	4 cut(s)	134, 206, 271, 287
Hpy8I	GTNNAC	2 cut(s)	309, 384
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	2 cut(s)	276, 466
HpyCH4V	TGCA	2 cut(s)	19, 309
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	2 cut(s)	276, 466
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	86, 304
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	2 cut(s)	339, 387
MaeII	ACGT	2 cut(s)	276, 466
MalI	GATC	7 cut(s)	99, 138, 159, 212, 361, 409, 442
MboI	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	6 cut(s)	97, 157, 210, 359, 407, 440
MhlI	GDGCHC	5 cut(s)	188, 201, 286, 311, 330
MluCI	AATT	4 cut(s)	373, 421, 454, 476
MnlI	CCTC	4 cut(s)	46, 161, 238, 297
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	2 cut(s)	180, 372
MspA1I	CMGCKG	2 cut(s)	223, 434
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	79, 118, 348
MvaI	CCWGG	2 cut(s)	118, 348
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
PaeR7I	CTCGAG	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	124, 147
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	76, 319
PshBI	ATTAAT	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	116, 346
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	116, 346
PspN4I	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
PspPI	GGNCC	2 cut(s)	381, 428
PsuI	RGATCY	6 cut(s)	97, 157, 210, 359, 407, 440
PvuII	CAGCTG	2 cut(s)	223, 434
RsaI	GTAC	2 cut(s)	115, 352
RsaNI	GTAC	2 cut(s)	114, 351
SaqAI	TTAA	2 cut(s)	180, 372
SatI	GCNGC	2 cut(s)	75, 318
Sau3AI	GATC	7 cut(s)	97, 136, 157, 210, 359, 407, 440
Sau96I	GGNCC	2 cut(s)	381, 428
ScrFI	CCNGG	3 cut(s)	79, 118, 348
SduI	GDGCHC	5 cut(s)	188, 201, 286, 311, 330
SetI	ASST	8 cut(s)	33, 122, 225, 243, 279, 308, 436, 469
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	152, 285, 321
SmoI	CTYRAG	3 cut(s)	152, 285, 321
SpeI	ACTAGT	2 cut(s)	338, 386
Sse9I	AATT	4 cut(s)	373, 421, 454, 476
SspMI	CTAG	2 cut(s)	339, 387
StyD4I	CCNGG	3 cut(s)	77, 116, 346
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	2 cut(s)	279, 469
TaqI	TCGA	3 cut(s)	51, 286, 414
TasI	AATT	4 cut(s)	373, 421, 454, 476
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	2 cut(s)	180, 372
Tru9I	TTAA	2 cut(s)	180, 372
TseI	GCWGC	2 cut(s)	74, 317
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	340
XspI	CTAG	2 cut(s)	339, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.