Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305349.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 617

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

gtgccaccagctgaactagaagccctccttgtaagccaccaatccattgcagatgcagctgttgttccgcaaaaagatgatgctgcaggggaagttccggttgcattcgtggttcgatctaatggtaatgaacttactgaagaggctataaaagaatttgtagcaaagcaggtggtgttttacaagagactgcacaaggtctacttcgtgcatgcaattccgaaatctccgtctggaaaaatcttaagaaaagacctcagagccaagctagccactccgaacgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

95

Amino Acids

10.37

Weight (kDa)

9.01

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	1 cut(s)	68
AclI	AACGTT	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	159
AflII	CTTAAG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	11, 59, 268
AluI	AGCT	3 cut(s)	11, 59, 268
Alw26I	GTCTC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	56, 83
ApoI	RAATTY	1 cut(s)	155
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AsuNHI	GCTAGC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	68, 70
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	17, 269
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	57, 84
BlsI	GCNGC	2 cut(s)	58, 85
BmsI	GCATC	2 cut(s)	43, 70
BmtI	GCTAGC	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	68, 70
BsgI	GTGCAG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	270
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	160
BspOI	GCTAGC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	45
BssMI	GATC	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	213, 270
BstDEI	CTNAG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 269
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	68, 70
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	213, 270
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	8 cut(s)	11, 23, 36, 59, 146, 263, 268, 272
CviKI_1	RGCY	8 cut(s)	11, 23, 36, 59, 146, 263, 268, 272
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	159
FaeI	CATG	1 cut(s)	215
FaiI	YATR	2 cut(s)	149, 213
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 188, 220
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	57, 84
Fsp4HI	GCNGC	2 cut(s)	57, 84
FspBI	CTAG	2 cut(s)	17, 269
GluI	GCNGC	2 cut(s)	57, 84
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	1 cut(s)	215
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	222, 260, 279
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	7 cut(s)	50, 56, 86, 104, 193, 211, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 269
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	21, 72, 111, 155, 219
Lsp1109I	GCAGC	2 cut(s)	68, 70
LweI	GCATC	2 cut(s)	43, 70
MaeI	CTAG	2 cut(s)	17, 269
MaeII	ACGT	1 cut(s)	282
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	2 cut(s)	155, 216
MnlI	CCTC	3 cut(s)	35, 136, 266
MseI	TTAA	2 cut(s)	245, 286
MspA1I	CMGCKG	2 cut(s)	11, 59
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	56, 269
NdeII	GATC	1 cut(s)	116
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	215
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	58, 85
Psp1406I	AACGTT	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	88
PvuII	CAGCTG	2 cut(s)	11, 59
SaqAI	TTAA	2 cut(s)	245, 286
SatI	GCNGC	2 cut(s)	57, 84
Sau3AI	GATC	1 cut(s)	116
SetI	ASST	7 cut(s)	13, 61, 174, 201, 258, 270, 285
SfaNI	GCATC	2 cut(s)	43, 70
SfcI	CTRYAG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	155, 216
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	17, 269
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	155, 216
Tru1I	TTAA	2 cut(s)	245, 286
Tru9I	TTAA	2 cut(s)	245, 286
TseI	GCWGC	2 cut(s)	56, 83
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	219
Vha464I	CTTAAG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	17, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.