Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003730.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Reverse (-)

17667 .. 18678

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003730.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggttgggtacatactggaaatcttggatactttgatgaaggtggccaactttgtttggttgaccgaattaaagaactcattaagtataaaggttttcagatttcctgatgctgaagctggtgaggtccctgttgcatatgttgtgcgctcgccaaacagttcactgaccgaagaagatatcaagagttttatagcgagtctggctgcatcttttaaaagactgcgacaagtgactttcataaacactgcccctatgtcggcatcaggaaaaatcctcagaagagagcttatcgagaaagtacgttccaaaatatcgaacatactgcacttgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

112

Amino Acids

12.6

Weight (kDa)

9.63

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	11, 303
AfiI	CCNNNNNNNGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	119, 289
AluI	AGCT	2 cut(s)	119, 289
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	3 cut(s)	100, 218, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	164, 246
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	10, 302
CviJI	RGCY	4 cut(s)	47, 119, 206, 289
CviKI_1	RGCY	4 cut(s)	47, 119, 206, 289
CviQI	GTAC	2 cut(s)	10, 302
DdeI	CTNAG	1 cut(s)	278
DraI	TTTAAA	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	181
FaiI	YATR	8 cut(s)	14, 89, 139, 141, 194, 242, 257, 323
FaqI	GGGAC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	63, 164
Hpy188I	TCNGA	2 cut(s)	101, 281
Hpy188III	TCNNGA	4 cut(s)	107, 184, 267, 295
Hpy8I	GTNNAC	2 cut(s)	63, 164
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	137, 209, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	304
HspAI	GCGC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	2, 105, 120, 144, 188, 252
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	3 cut(s)	100, 218, 272
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	185, 188, 294
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	2 cut(s)	118, 287
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	4 cut(s)	71, 83, 216, 337
Msp20I	TGGCCA	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeI	CATATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	11, 303
RsaNI	GTAC	2 cut(s)	10, 302
SaqAI	TTAA	4 cut(s)	71, 83, 216, 337
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	208
SetI	ASST	6 cut(s)	45, 96, 121, 129, 291, 307
SfaNI	GCATC	3 cut(s)	100, 218, 272
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	294, 317
TaqII	GACCGA	2 cut(s)	80, 185
TasI	AATT	1 cut(s)	68
Tru1I	TTAA	4 cut(s)	71, 83, 216, 337
Tru9I	TTAA	4 cut(s)	71, 83, 216, 337
TscAI	CASTG	2 cut(s)	171, 253
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	53, 229
TspRI	CASTG	2 cut(s)	171, 253
VpaK11BI	GGWCC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.