Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002486.1

Orthogroup ID

OG0000517

Physical Location & Seq

Genomic Coordinates Forward (+)

16490 .. 18323

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002486.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggacttcttcatacctccaaaggatggatggcctaacggcgatgccacaaccacaactcatttaattgatcagaactcaatgtcagggcaacaaggttttgcagacttggcggtagcaccagctgaacttgaaggcctgctagtttctcacagtgaaatattggacgccgttgtcatcccatttcctgatgctgaagctggtgaggtccctgttgcatatgttgtgcgctcgccaaacagttcactgactgaagaagatatcaagagttttatagcgagtcaggtaaggaggcaacttcaaggaagaatccacaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

106

Amino Acids

11.47

Weight (kDa)

4.43

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05160
fragaria_vesca	FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_3g30980 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460 FvH4_6g16460
malus_domestica	MD00G1033000.v1.1 MD00G1033100.v1.1 MD11G1145900.v1.1
prunus_persica	Prupe.1G562500_v2.0.a1 Prupe.6G109000_v2.0.a1 Prupe.6G220600_v2.0.a1 Prupe.7G129300_v2.0.a1
pyrus_communis	pycom10g19750 pycom11g11900
rosa_chinensis	RchiOBHm_Chr4g0437371 RchiOBHm_Chr5g0057221 RchiOBHm_Chr5g0057231 RchiOBHm_Chr5g0057411 RchiOBHm_Chr5g0057421 RchiOBHm_Chr5g0057431 RchiOBHm_Chr5g0057541 RchiOBHm_Chr5g0057621 RchiOBHm_Chr5g0057631 RchiOBHm_Chr7g0218731
rosa_laevigata	RLG00000024275 RLG00000035153 RLG00000035162 RLG00000035163
rosa_multiflora	Rmu_co8225990.1_g000001 Rmu_co8293931.1_g000001 Rmu_co8305349.1_g000001 Rmu_sc0001058.1_g000006 Rmu_sc0001334.1_g000005 Rmu_sc0002486.1_g000002 Rmu_sc0002486.1_g000004 Rmu_sc0002486.1_g000006 Rmu_sc0003730.1_g000007 Rmu_sc0009763.1_g000003 Rmu_sc0012503.1_g000004 Rmu_sc0041005.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022890 Rroxscaffold_1G00022900 Rroxscaffold_1G00023020 Rroxscaffold_1G00039850 Rroxscaffold_2G00089660 Rroxscaffold_6G00410920 Rroxscaffold_7G00210330
rosa_rugosa	Rorug01G0121100 Rorug05G0306100 Rorug05G0306200 Rorug05G0306700 Rorug05G0308100
rosa_samantha	Rh1AG142700 Rh1BG111300 Rh1DG148300 Rh2DG519700 Rh3DG192200 Rh5BG387400 Rh5BG387600 Rh5CG409800 Rh5CG409900 Rh5CG410000 Rh5CG411000 Rh5CG411600 Rh5CG411700 Rh5DG400500 Rh5DG400600 Rh5DG400700 Rh5DG401700 Rh5DG401800 Rh7CG338500
rosa_wichuraiana	Rw5G035330 Rw5G035540 Rw5G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	1 cut(s)	113
AcuI	CTGAAG	2 cut(s)	216, 273
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	134, 302
AluBI	AGCT	2 cut(s)	125, 200
AluI	AGCT	2 cut(s)	125, 200
AoxI	GGCC	2 cut(s)	32, 136
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	208
BccI	CCATC	2 cut(s)	20, 24
BceAI	ACGGC	2 cut(s)	55, 155
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	2 cut(s)	34, 181
BsaHI	GRCGYC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseGI	GGATG	3 cut(s)	31, 35, 177
BseLI	CCNNNNNNNGG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	34, 138
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	34, 138
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	34, 138
BspLI	GGNNCC	1 cut(s)	210
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	155, 242
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	140, 233
BstF5I	GGATG	3 cut(s)	31, 35, 177
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	34, 138
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	31, 35, 177
BtsIMutI	CAGTG	2 cut(s)	160, 245
Cac8I	GCNNGC	2 cut(s)	140, 233
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	176
CviJI	RGCY	4 cut(s)	34, 125, 138, 200
CviKI_1	RGCY	4 cut(s)	34, 125, 138, 200
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	216, 273
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	262
FaiI	YATR	4 cut(s)	14, 220, 222, 275
FaqI	GGGAC	1 cut(s)	194
FauNDI	CATATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	70
FokI	GGATG	3 cut(s)	38, 42, 164
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	34, 138
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	280, 309
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	188, 265
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	155, 242
HpyCH4V	TGCA	2 cut(s)	104, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	72, 135, 152, 186, 201, 225, 269
LweI	GCATC	2 cut(s)	34, 181
MaeI	CTAG	1 cut(s)	143
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	266, 269, 318
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	27, 199, 285
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	289
SetI	ASST	6 cut(s)	19, 100, 127, 202, 210, 288
SfaNI	GCATC	2 cut(s)	34, 181
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	1 cut(s)	162
SspMI	CTAG	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	155, 242
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	160, 252
TspRI	CASTG	2 cut(s)	160, 252
Van91I	CCANNNNNTGG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.