MD00G1202100.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000190
Physical Location & Seq
Forward (+)
47912370 .. 47913872
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1202100.v1.1.491

Sequence Viewer

Length: 570 bp
ATGATGCCATCCTCAGTACTTCAGGTGAAACGATTGCAGCCGGAACTTATAATTCCGGCAAAGCCAACGCCTCGAGAAACAAAGTTTCTCTCAGATATTGACGATCAGGAAGGCATGAGGTTTCAGCTTCCTATCATAATGTGCTACAAAGACAACCCTTCACTTAATGAAAATCGTAATCCCGTTAAGACGATTAGGGAAGCCTTAAGTAGAGCATTAGTGTATTACTACCCTTTAGCTGGTAGGCTTAGGGAAGGGCCTGACAGAAAGCTCATGGTCGATTGCAATGGTGAAGGTATCTTGTTCGTCGAGGCTTCTGCTAATGTCACACTTGAGCAACTAGGAGACAAAATTTCTACCCCCTTGTCCACTCTTAGAGGAGTGACCCGTCTTACATGTGGAGGTTTCATACTTGCATTGCGCCTAAACCACACAATGTGTGATGCACCTGGATTTCTCCAGTTCCTGACCGCCGTTGCGGAGATGGCAAGAGGCGTAATACACGCACCATCTATTCTACCAATGTGGGAGAGAGAGCTCTTGTTCGCCCCCGAGATCCACCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

6.33

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 184 4.1e-36 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AciI CCGC 2 cut(s) 471, 479
AclWI GGATC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 438
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 4 cut(s) 127, 239, 271, 538
AluI AGCT 4 cut(s) 127, 239, 271, 538
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 550
AlwNI CAGNNNCTG 1 cut(s) 466
Ama87I CYCGRG 2 cut(s) 72, 551
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 351
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 37, 302
AvaI CYCGRG 2 cut(s) 72, 551
BanII GRGCYC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 16, 478, 517
BceAI ACGGC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 341
BfrI CTTAAG 1 cut(s) 205
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 450
BmeT110I CYCGRG 2 cut(s) 72, 551
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 2 cut(s) 292, 416
BseBI CCWGG 1 cut(s) 450
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 2 cut(s) 292, 416
BseMII CTCAG 2 cut(s) 27, 105
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 2 cut(s) 72, 551
BsiSI CCGG 2 cut(s) 41, 56
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 2 cut(s) 72, 551
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 2 cut(s) 103, 555
BspACI CCGC 2 cut(s) 471, 479
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 26, 104
BspPI GGATC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 292, 416
BsrI ACTGG 1 cut(s) 460
BssMI GATC 2 cut(s) 103, 555
Bst2UI CCWGG 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 205
BstDEI CTNAG 4 cut(s) 13, 91, 248, 374
BstF5I GGATG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 2 cut(s) 106, 558
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 103, 555
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 115, 274, 396
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 4 cut(s) 13, 91, 248, 374
DpnI GATC 2 cut(s) 105, 557
DpnII GATC 2 cut(s) 103, 555
DraIII CACNNNGTG 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 5
Eco88I CYCGRG 2 cut(s) 72, 551
EcoICRI GAGCTC 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 540
FaeI CATG 3 cut(s) 118, 277, 399
FaiI YATR 6 cut(s) 50, 116, 137, 275, 397, 410
FatI CATG 3 cut(s) 114, 273, 395
Fnu4HI GCNGC 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 1 cut(s) 259
HapII CCGG 2 cut(s) 41, 56
HhaI GCGC 1 cut(s) 423
Hin1II CATG 3 cut(s) 118, 277, 399
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HpaII CCGG 2 cut(s) 41, 56
HphI GGTGA 2 cut(s) 37, 302
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 74, 107, 466
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 104, 168, 248, 287
HpyCH4V TGCA 4 cut(s) 37, 285, 416, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 4 cut(s) 13, 91, 248, 374
Hsp92II CATG 3 cut(s) 118, 277, 399
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 103, 555
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 325, 382
MalI GATC 2 cut(s) 105, 557
MboI GATC 2 cut(s) 103, 555
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 2 cut(s) 51, 351
MnlI CCTC 7 cut(s) 22, 81, 111, 304, 371, 395, 485
MseI TTAA 3 cut(s) 165, 186, 206
MspCI CTTAAG 1 cut(s) 205
MspI CCGG 2 cut(s) 41, 56
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 2 cut(s) 103, 555
NlaIII CATG 3 cut(s) 118, 277, 399
NmuCI GTSAC 2 cut(s) 325, 382
NspI RCATGY 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 72
PciI ACATGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 39
PscI ACATGT 1 cut(s) 395
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 555
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 540
SaqAI TTAA 3 cut(s) 165, 186, 206
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 103, 555
Sau96I GGNCC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 540
SetI ASST 9 cut(s) 27, 122, 129, 241, 273, 298, 406, 451, 540
SfaNI GCATC 1 cut(s) 433
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 3 cut(s) 72, 205, 332
SmoI CTYRAG 3 cut(s) 72, 205, 332
Sse9I AATT 2 cut(s) 51, 351
SsiI CCGC 2 cut(s) 471, 479
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 448
TaqI TCGA 3 cut(s) 73, 279, 309
TasI AATT 2 cut(s) 51, 351
TatI WGTACW 1 cut(s) 16
Tru1I TTAA 3 cut(s) 165, 186, 206
Tru9I TTAA 3 cut(s) 165, 186, 206
TseFI GTSAC 2 cut(s) 325, 382
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 2 cut(s) 325, 382
TspDTI ATGAA 2 cut(s) 183, 397
Vha464I CTTAAG 1 cut(s) 205
XapI RAATTY 1 cut(s) 351
XceI RCATGY 1 cut(s) 399
XhoI CTCGAG 1 cut(s) 72
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.