Rmu_sc0004199.1_g000014

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004199.1
OG0000190
Physical Location & Seq
Reverse (-)
84165 .. 84851
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004199.1_g000014.1.cds

Sequence Viewer

Length: 687 bp
atggtgcaaaaatctttctactttggtcccaatgagataagggccatgaagaaacatcttccaccgcacctttccaattgctctacattcgacctcataacatcctgtttgtggaagtgccgcacagttgcactagaacttaatccggaacaggttgttcgggtttcatgcatagtcaatgcacgtgggaagctcaacagtcttcgtcttcctttgggttactacggcaatgcatttgcatacccagctgctgtttcgggagtgaaacaattgtgtgaaagttcgttgggatatgcactggagttggtgatgaaggcaaaagatgaaatgaatgaagagtacatgagatcagtggcagatcttatggtcataagaggacggcctccatttacattgaccgggaacttcatagtttcagataatcgacgtactggcgttggagatgtcaacttggggtggggaaagccagcattttctggacctgccaaggccttgaaccttattagtttctatgttgagcaaaaaaaggaaaaagaggacgggattttggtgccagtgtgcttgccatcgttgagtatggtgagatttcagcaggaactcgagaagatgacgtcgtctgagatagtggaaaatataaataacactaaatctgctaataatgttgtaaggataattcctcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

228

Amino Acids

25.45

Weight (kDa)

9.12

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 550
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 2 cut(s) 65, 121
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 611
AfaI GTAC 2 cut(s) 341, 430
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 496
AluBI AGCT 2 cut(s) 193, 248
AluI AGCT 2 cut(s) 193, 248
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 3 cut(s) 42, 380, 489
ApeKI GCWGC 1 cut(s) 248
AspS9I GGNCC 3 cut(s) 26, 42, 479
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 319, 592
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 2 cut(s) 26, 479
BanI GGYRCC 1 cut(s) 550
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 194, 200
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 574
BceAI ACGGC 2 cut(s) 241, 395
BcnI CCSGG 1 cut(s) 400
BfaI CTAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 490
BglII AGATCT 1 cut(s) 358
BisI GCNGC 2 cut(s) 121, 249
BlsI GCNGC 2 cut(s) 122, 250
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 2 cut(s) 26, 479
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 26, 42, 479
BmiI GGNNCC 2 cut(s) 28, 552
BmrFI CCNGG 1 cut(s) 400
BpiI GAAGAC 2 cut(s) 194, 200
BpmI CTGGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 486, 677
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 303, 436, 554
Bse3DI GCAATG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 486, 677
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 3 cut(s) 303, 436, 554
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 3 cut(s) 44, 382, 491
BshNI GGYRCC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 2 cut(s) 146, 399
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 3 cut(s) 44, 382, 491
BsoBI CYCGRG 1 cut(s) 599
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 2 cut(s) 347, 358
BspACI CCGC 2 cut(s) 65, 121
BspANI GGCC 3 cut(s) 44, 382, 491
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 28, 552
BspMI ACCTGC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 3 cut(s) 303, 436, 554
BssECI CCNNGG 2 cut(s) 486, 677
BssMI GATC 2 cut(s) 347, 358
BssNI GRCGYC 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 127, 200
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 468, 563
BstDEI CTNAG 1 cut(s) 618
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 2 cut(s) 350, 361
BstMBI GATC 2 cut(s) 347, 358
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 2 cut(s) 194, 200
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 3 cut(s) 44, 382, 491
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 3 cut(s) 296, 357, 561
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 468, 563
CaiI CAGNNNCTG 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 26, 42, 479
Csp6I GTAC 2 cut(s) 340, 429
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 46, 168, 343
CviJI RGCY 6 cut(s) 44, 193, 248, 382, 466, 491
CviKI_1 RGCY 6 cut(s) 44, 193, 248, 382, 466, 491
CviQI GTAC 2 cut(s) 340, 429
DdeI CTNAG 1 cut(s) 618
DpnI GATC 2 cut(s) 349, 360
DpnII GATC 2 cut(s) 347, 358
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 26, 479
Eco72I CACGTG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 486
EcoT22I ATGCAT 2 cut(s) 173, 235
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 3 cut(s) 49, 171, 346
FaqI GGGAC 1 cut(s) 12
FatI CATG 3 cut(s) 45, 167, 342
Fnu4HI GCNGC 2 cut(s) 121, 249
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 121, 249
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 121, 249
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 3 cut(s) 44, 382, 491
HapII CCGG 2 cut(s) 146, 399
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 3 cut(s) 49, 171, 346
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HpaII CCGG 2 cut(s) 146, 399
HphI GGTGA 2 cut(s) 319, 592
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 418, 619
Hpy188III TCNNGA 4 cut(s) 146, 258, 477, 601
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 2 cut(s) 429, 616
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 127, 200
HpyCH4IV ACGT 3 cut(s) 184, 427, 611
HpyCH4V TGCA 7 cut(s) 7, 131, 171, 182, 233, 239, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 618
HpySE526I ACGT 3 cut(s) 184, 427, 611
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 3 cut(s) 49, 171, 346
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 347, 358
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 134
MaeII ACGT 3 cut(s) 184, 427, 611
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 349, 360
MboI GATC 2 cut(s) 347, 358
MboII GAAGA 6 cut(s) 50, 61, 194, 200, 347, 616
MfeI CAATTG 2 cut(s) 76, 269
MflI RGATCY 1 cut(s) 358
MluCI AATT 3 cut(s) 76, 269, 672
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 104, 368, 393, 529, 687
Mph1103I ATGCAT 2 cut(s) 173, 235
MroI TCCGGA 1 cut(s) 145
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 146, 399
MspR9I CCNGG 1 cut(s) 400
MunI CAATTG 2 cut(s) 76, 269
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 400
NdeII GATC 2 cut(s) 347, 358
NlaIII CATG 3 cut(s) 49, 171, 346
NlaIV GGNNCC 2 cut(s) 28, 552
NsiI ATGCAT 2 cut(s) 173, 235
PaeR7I CTCGAG 1 cut(s) 599
PceI AGGCCT 1 cut(s) 491
PflFI GACNNNGTC 1 cut(s) 613
PkrI GCNGC 2 cut(s) 122, 250
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 185
PspCI CACGTG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 28, 552
PspPI GGNCC 3 cut(s) 26, 42, 479
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 2 cut(s) 341, 430
RsaNI GTAC 2 cut(s) 340, 429
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 121, 249
Sau3AI GATC 2 cut(s) 347, 358
Sau96I GGNCC 3 cut(s) 26, 42, 479
ScrFI CCNGG 1 cut(s) 400
Sfr274I CTCGAG 1 cut(s) 599
SinI GGWCC 2 cut(s) 26, 479
SlaI CTCGAG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 3 cut(s) 76, 269, 672
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 2 cut(s) 65, 121
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 127, 200
TaiI ACGT 3 cut(s) 187, 430, 614
TaqI TCGA 3 cut(s) 90, 424, 600
TasI AATT 3 cut(s) 76, 269, 672
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 3 cut(s) 303, 357, 561
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 7 cut(s) 62, 156, 326, 339, 344, 348, 397
TspRI CASTG 3 cut(s) 303, 357, 561
Tth111I GACNNNGTC 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 26, 479
XhoI CTCGAG 1 cut(s) 599
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 612
Zsp2I ATGCAT 2 cut(s) 173, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.