Rroxscaffold_2G00146810

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000190
Physical Location & Seq
Forward (+)
84681427 .. 84682118
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146810.1

Sequence Viewer

Length: 663 bp
ATGTGTGATGCCCCTGGATTGGTCCAGTTCTTGAACACAGTAGGGGACATGGCTCAAGGAAAGAATGCACCATCTATTCCACCAGTGTGGGAGCGAGAGGTCTTGAATGCCCGAGATCCACCACGAATTGCATGTATACATCACGAATACGAGGAAATGATTGACTACTCAGATCAGGGCTCTGATGAGGCAGAGATAAGGGCCTTGAAGAAACATCTTCCATCACACCTTTCCAATTGGTCGACATTCGACCTTATAACATCTTGTTTGTGGAAATGCCGCACAGTTGCACTAGAACTTAATCCGGAACAGGTTGTTCGGGTTTCATGCCTAGTCAATGCACGTGGGAAGCGCAACAATCTACGTCTTCGTCTGGGTTACTACGGCAATGCATTCGCATACCCAGCTGCTATTTCGAGAGTGAAACAATTGTGTGAAAGTCCGTTGGGATATGCAGTGGAGTTGGTGATGAAGGCAAAAGGTGAAATGAATGAAGAGTACATGAAATCAGTGGCAGATCTTATGGTCATAAGAGGACGGCCTCTATTTATTTTGACCGGGAACTTCATAGTTTCAGATACGACGTACTGGCTTTGGAGAAGTCAACTTGGGGTGGGGAAAGCCGGCATTTTCTGGACCTCCCAAGGCCTTGAACCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

220

Amino Acids

24.86

Weight (kDa)

6.89

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 175 2.6e-18 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccI GTMKAC 2 cut(s) 136, 242
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 110
AcvI CACGTG 1 cut(s) 344
AfaI GTAC 2 cut(s) 500, 587
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 4 cut(s) 34, 106, 208, 653
AjnI CCWGG 1 cut(s) 13
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 3 cut(s) 201, 539, 646
ApeKI GCWGC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 22, 201, 636
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 478, 494
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 2 cut(s) 22, 636
BanII GRGCYC 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 79, 229
BceAI ACGGC 2 cut(s) 400, 554
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 1 cut(s) 559
BfaI CTAG 2 cut(s) 293, 332
BglII AGATCT 1 cut(s) 517
BisI GCNGC 2 cut(s) 280, 408
BlsI GCNGC 2 cut(s) 281, 409
Bme1390I CCNGG 2 cut(s) 15, 559
Bme18I GGWCC 2 cut(s) 22, 636
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 3 cut(s) 22, 201, 636
BmrFI CCNGG 2 cut(s) 15, 559
BpiI GAAGAC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 13, 643
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 3 cut(s) 25, 83, 593
Bse3DI GCAATG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 13, 643
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 3 cut(s) 25, 83, 593
BseXI GCAGC 1 cut(s) 394
BseYI CCCAGC 1 cut(s) 403
BshFI GGCC 3 cut(s) 203, 541, 648
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 305, 558, 624
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 3 cut(s) 70, 112, 392
BsnI GGCC 3 cut(s) 203, 541, 648
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 3 cut(s) 115, 172, 517
BspACI CCGC 1 cut(s) 280
BspANI GGCC 3 cut(s) 203, 541, 648
BspCNI CTCAG 1 cut(s) 182
BspEI TCCGGA 1 cut(s) 304
BspPI GGATC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 3 cut(s) 25, 83, 593
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 13, 643
BssMI GATC 3 cut(s) 115, 172, 517
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 40, 286
Bst6I CTCTTC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 3 cut(s) 118, 175, 520
BstMBI GATC 3 cut(s) 115, 172, 517
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 13, 557
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 2 cut(s) 115, 517
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 2 cut(s) 115, 517
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 203, 541, 648
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 90, 462, 516
Cac8I GCNNGC 1 cut(s) 625
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 3 cut(s) 22, 201, 636
Csp6I GTAC 2 cut(s) 499, 586
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 4 cut(s) 49, 132, 327, 502
CviJI RGCY 8 cut(s) 53, 180, 203, 407, 541, 592, 623, 648
CviKI_1 RGCY 8 cut(s) 53, 180, 203, 407, 541, 592, 623, 648
CviQI GTAC 2 cut(s) 499, 586
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 117, 174, 519
DpnII GATC 3 cut(s) 115, 172, 517
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 643
Eco147I AGGCCT 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 22, 636
Eco72I CACGTG 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 4 cut(s) 52, 135, 330, 505
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 48, 131, 326, 501
FblI GTMKAC 2 cut(s) 136, 242
Fnu4HI GCNGC 2 cut(s) 280, 408
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 280, 408
FspBI CTAG 2 cut(s) 293, 332
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 280, 408
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 3 cut(s) 203, 541, 648
HapII CCGG 3 cut(s) 305, 558, 624
HhaI GCGC 1 cut(s) 354
Hin1II CATG 4 cut(s) 52, 135, 330, 505
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 243, 605
HindII GTYRAC 2 cut(s) 243, 605
HpaII CCGG 3 cut(s) 305, 558, 624
HphI GGTGA 2 cut(s) 478, 494
Hpy166II GTNNAC 3 cut(s) 137, 243, 605
Hpy188I TCNGA 3 cut(s) 172, 184, 577
Hpy188III TCNNGA 6 cut(s) 31, 103, 143, 305, 417, 634
Hpy8I GTNNAC 3 cut(s) 137, 243, 605
Hpy99I CGWCG 1 cut(s) 586
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 2 cut(s) 40, 286
HpyCH4IV ACGT 3 cut(s) 343, 364, 584
HpyCH4V TGCA 6 cut(s) 68, 131, 290, 341, 392, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 3 cut(s) 343, 364, 584
Hsp92II CATG 4 cut(s) 52, 135, 330, 505
HspAI GCGC 1 cut(s) 352
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 623
KroNI GCCGGC 1 cut(s) 625
Kzo9I GATC 3 cut(s) 115, 172, 517
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 394
MaeI CTAG 2 cut(s) 293, 332
MaeII ACGT 3 cut(s) 343, 364, 584
MaeIII GTNAC 1 cut(s) 377
MalI GATC 3 cut(s) 117, 174, 519
MboI GATC 3 cut(s) 115, 172, 517
MboII GAAGA 4 cut(s) 209, 220, 359, 506
MfeI CAATTG 2 cut(s) 235, 428
MflI RGATCY 2 cut(s) 115, 517
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 3 cut(s) 126, 235, 428
MnlI CCTC 6 cut(s) 91, 145, 181, 527, 552, 649
Mph1103I ATGCAT 1 cut(s) 394
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 623
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 3 cut(s) 305, 558, 624
MspR9I CCNGG 2 cut(s) 15, 559
MunI CAATTG 2 cut(s) 235, 428
Mva1269I GAATGC 3 cut(s) 70, 112, 392
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 404
NaeI GCCGGC 1 cut(s) 625
NciI CCSGG 1 cut(s) 559
NdeII GATC 3 cut(s) 115, 172, 517
NgoMIV GCCGGC 1 cut(s) 623
NlaIII CATG 4 cut(s) 52, 135, 330, 505
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 85
PceI AGGCCT 1 cut(s) 648
PctI GAATGC 3 cut(s) 70, 112, 392
PdiI GCCGGC 1 cut(s) 625
PkrI GCNGC 2 cut(s) 281, 409
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 344
PsiI TTATAA 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 13
PspCI CACGTG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 13
PspPI GGNCC 3 cut(s) 22, 201, 636
PsuI RGATCY 2 cut(s) 115, 517
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 2 cut(s) 500, 587
RsaNI GTAC 2 cut(s) 499, 586
RseI CAYNNNNRTG 1 cut(s) 85
SalI GTCGAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 280, 408
Sau3AI GATC 3 cut(s) 115, 172, 517
Sau96I GGNCC 3 cut(s) 22, 201, 636
ScrFI CCNGG 2 cut(s) 15, 559
SduI GDGCHC 1 cut(s) 182
SinI GGWCC 2 cut(s) 22, 636
SmiMI CAYNNNNRTG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 3 cut(s) 126, 235, 428
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 1 cut(s) 280
SspMI CTAG 2 cut(s) 293, 332
StuI AGGCCT 1 cut(s) 648
StyD4I CCNGG 2 cut(s) 13, 557
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 2 cut(s) 40, 286
TaiI ACGT 3 cut(s) 346, 367, 587
TaqI TCGA 3 cut(s) 242, 249, 416
TasI AATT 3 cut(s) 126, 235, 428
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 3 cut(s) 90, 462, 516
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 6 cut(s) 315, 485, 503, 507, 518, 556
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 3 cut(s) 90, 462, 516
VpaK11BI GGWCC 2 cut(s) 22, 636
XceI RCATGY 1 cut(s) 135
XmiI GTMKAC 2 cut(s) 136, 242
XspI CTAG 2 cut(s) 293, 332
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.