MD06G1018200.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000190
Physical Location & Seq
Reverse (-)
2240200 .. 2240388
189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1018200.v1.1.491

Sequence Viewer

Length: 189 bp
ATGAATGAAGCATACTTGAGATCAGTGGCAGATCTTTTGGTACTAAGAGGGCGACCTCAATATTCATCGACAGGAAGTTATTTAATAGTTTCTGATAAAACGCGTGCAGGTTTTGGAGATGTCAATTTTGGATGGGGACAACCGGTATTTGCTGGACCCTCGAAGGCCTTGGATTTGATTAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

63

Amino Acids

6.74

Weight (kDa)

8.14

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccII CGCG 1 cut(s) 103
AfaI GTAC 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 101
AgeI ACCGGT 1 cut(s) 142
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
AoxI GGCC 1 cut(s) 165
AsiGI ACCGGT 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
BccI CCATC 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 98
BglII AGATCT 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 142
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 20, 31
BspANI GGCC 1 cut(s) 167
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 20, 31
BssT1I CCWWGG 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 2 cut(s) 23, 34
BstMBI GATC 2 cut(s) 20, 31
BstUI CGCG 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 41
CspAI ACCGGT 1 cut(s) 142
CviJI RGCY 2 cut(s) 167, 183
CviKI_1 RGCY 2 cut(s) 167, 183
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 22, 33
DpnII GATC 2 cut(s) 20, 31
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaiI YATR 1 cut(s) 13
FaqI GGGAC 1 cut(s) 150
FokI GGATG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 143
HpaII CCGG 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 20, 31
LpnPI CCDG 4 cut(s) 57, 93, 138, 156
MalI GATC 2 cut(s) 22, 33
MboI GATC 2 cut(s) 20, 31
MflI RGATCY 1 cut(s) 31
MluCI AATT 1 cut(s) 124
MluI ACGCGT 1 cut(s) 101
MnlI CCTC 3 cut(s) 41, 66, 169
MseI TTAA 2 cut(s) 83, 187
MspI CCGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 103
NdeII GATC 2 cut(s) 20, 31
NlaIV GGNNCC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 167
PinAI ACCGGT 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 83, 187
Sau3AI GATC 2 cut(s) 20, 31
Sau96I GGNCC 1 cut(s) 155
SetI ASST 3 cut(s) 58, 112, 185
SgeI CNNG 9 cut(s) 28, 84, 114, 116, 120, 155, 165, 172, 181
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 124
SseBI AGGCCT 1 cut(s) 167
SspI AATATT 1 cut(s) 62
StuI AGGCCT 1 cut(s) 167
StyI CCWWGG 1 cut(s) 168
TaqI TCGA 2 cut(s) 68, 161
TasI AATT 1 cut(s) 124
Tru1I TTAA 2 cut(s) 83, 187
Tru9I TTAA 2 cut(s) 83, 187
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 17, 21, 54
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.