Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000190

Physical Location & Seq

Genomic Coordinates Reverse (-)

18651471 .. 18652199

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTGCCAGGCTCTTTGGGAAACCTAAAATGGAACCGATCACCTTGGAAAAGTTAAGTGAGAATCTTGAAAGGCTTGAGAAAATGGAGAAAGTACTCCAAAAGAAGGCTGCTGCTGAACTTGAAAAGGCGACGCGATTCAGCAATGCAAAGAATAAAAGAGCTGCTATGCAATCTCTGAAGAAGAAGAGGTTGTATGATCAGCAAATAGAGAACAACGGAAACTCCCAATTGCAGGTCCATGATCTGATGATAATGCTAGAAGGTGCAAAAGCCAACATCGAAACTGTAGATGCCTTGAGAAATGGAGCAGCTGCACTGAAGGCAATGCAGAAAGCAGCGAATATAGATGAAGTGGAAAAGACCTTGGACGAGGTTCATGAGCAGACAGAGAAGATGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGATTTGATGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAAGTGCCGAGTTGGAACAACAACTTCTTCAGCCTGCAGCAACTTCTTCAGCTCCAGTTCACCTCCCAGCAGGAAGGCAACCAAATCGTCCTCTTCTCCAGAAGCCCACCGTTGATGAAGAAGATGAACTAGCTGCTTTGCAGGCTGAGATGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010327 GO:0010597 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019372 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

214

Amino Acids

24.02

Weight (kDa)

4.84

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 180	2.5e-37	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03480 AT5G17540
fragaria_vesca	FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica	MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica	Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis	pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis	RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata	RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora	Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa	Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha	Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana	Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccII	CGCG	1 cut(s)	136
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	4 cut(s)	200, 341, 497, 516
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	106, 235
AgsI	TTSAA	3 cut(s)	71, 125, 476
AjnI	CCWGG	2 cut(s)	8, 408
AluBI	AGCT	6 cut(s)	164, 314, 416, 481, 536, 617
AluI	AGCT	6 cut(s)	164, 314, 416, 481, 536, 617
AlwI	GGATC	1 cut(s)	400
ApeKI	GCWGC	8 cut(s)	110, 113, 164, 311, 314, 338, 521, 617
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	34, 536
AvaII	GGWCC	1 cut(s)	238
BbvI	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 533, 604
BccI	CCATC	1 cut(s)	628
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	2 cut(s)	10, 410
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	2 cut(s)	260, 614
BfmI	CTRYAG	2 cut(s)	288, 519
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 522, 618
BlsI	GCNGC	8 cut(s)	112, 115, 166, 313, 316, 340, 523, 619
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	10, 410
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	10, 410
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	2 cut(s)	522, 566
BpuEI	CTTGAG	2 cut(s)	98, 319
BsaJI	CCNNGG	2 cut(s)	45, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 235
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	2 cut(s)	151, 333
BseBI	CCWGG	2 cut(s)	10, 410
BseDI	CCNNGG	2 cut(s)	45, 366
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	106, 235
BseMI	GCAATG	2 cut(s)	151, 333
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 533, 604
BseYI	CCCAGC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	106, 235
Bsp143I	GATC	4 cut(s)	39, 199, 244, 405
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	151, 333
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	45, 366
BssMI	GATC	4 cut(s)	39, 199, 244, 405
BssT1I	CCWWGG	2 cut(s)	45, 366
Bst2UI	CCWGG	2 cut(s)	10, 410
Bst4CI	ACNGT	2 cut(s)	289, 595
Bst6I	CTCTTC	3 cut(s)	182, 471, 582
BstC8I	GCNNGC	2 cut(s)	519, 627
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	136
BstKTI	GATC	4 cut(s)	42, 202, 247, 408
BstMBI	GATC	4 cut(s)	39, 199, 244, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 626, 635
BstNI	CCWGG	2 cut(s)	10, 410
BstSCI	CCNGG	2 cut(s)	8, 408
BstSFI	CTRYAG	2 cut(s)	288, 519
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 533, 604
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	519, 627
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	2 cut(s)	242, 380
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	4 cut(s)	41, 201, 246, 407
DpnII	GATC	4 cut(s)	39, 199, 244, 405
Eam1104I	CTCTTC	3 cut(s)	182, 471, 582
EarI	CTCTTC	3 cut(s)	182, 471, 582
Eco130I	CCWWGG	2 cut(s)	45, 366
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	4 cut(s)	200, 341, 497, 516
EcoRII	CCWGG	2 cut(s)	8, 408
EcoT14I	CCWWGG	2 cut(s)	45, 366
ErhI	CCWWGG	2 cut(s)	45, 366
FaeI	CATG	2 cut(s)	245, 383
FaiI	YATR	6 cut(s)	170, 198, 243, 347, 381, 643
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	2 cut(s)	241, 379
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 522, 618
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 522, 618
FspBI	CTAG	2 cut(s)	260, 614
GluI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 522, 618
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	522, 566
HgaI	GACGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	245, 383
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	2 cut(s)	64, 138
HphI	GGTGA	2 cut(s)	34, 536
Hpy166II	GTNNAC	2 cut(s)	423, 544
Hpy188I	TCNGA	2 cut(s)	180, 249
Hpy188III	TCNNGA	3 cut(s)	68, 380, 583
Hpy8I	GTNNAC	2 cut(s)	423, 544
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	100, 257, 316, 552
HpyCH4III	ACNGT	2 cut(s)	289, 595
HpyCH4V	TGCA	8 cut(s)	149, 172, 235, 269, 317, 331, 521, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 626, 635
HpyF3I	CTNAG	1 cut(s)	630
Hsp92II	CATG	2 cut(s)	245, 383
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	39, 199, 244, 405
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	308, 541
Lsp1109I	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 533, 604
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	260, 614
MalI	GATC	4 cut(s)	41, 201, 246, 407
MboI	GATC	4 cut(s)	39, 199, 244, 405
MfeI	CAATTG	2 cut(s)	230, 429
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	3 cut(s)	230, 429, 458
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	5 cut(s)	183, 367, 445, 557, 585
MseI	TTAA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	10, 410
MunI	CAATTG	2 cut(s)	230, 429
MvaI	CCWGG	2 cut(s)	10, 410
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	323, 626, 635
NdeII	GATC	4 cut(s)	39, 199, 244, 405
NlaIII	CATG	2 cut(s)	245, 383
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	64, 138
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	8 cut(s)	112, 115, 166, 313, 316, 340, 523, 619
Psp6I	CCWGG	2 cut(s)	8, 408
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	2 cut(s)	8, 408
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 522, 618
Sau3AI	GATC	4 cut(s)	39, 199, 244, 405
Sau96I	GGNCC	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	10, 410
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	288, 519
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	77, 298
SmoI	CTYRAG	2 cut(s)	77, 298
Sse9I	AATT	3 cut(s)	230, 429, 458
SspMI	CTAG	2 cut(s)	260, 614
StyD4I	CCNGG	2 cut(s)	8, 408
StyI	CCWWGG	2 cut(s)	45, 366
TaaI	ACNGT	2 cut(s)	289, 595
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	230, 429, 458
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	64, 138
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	8 cut(s)	110, 113, 164, 311, 314, 338, 521, 617
TspDTI	ATGAA	6 cut(s)	366, 368, 413, 471, 615, 624
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	238
XspI	CTAG	2 cut(s)	260, 614
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.