MD06G1019300.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000190
Physical Location & Seq
Reverse (-)
2304415 .. 2305864
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1019300.v1.1.491

Sequence Viewer

Length: 354 bp
ATGTGTTACAAGAATAACCCTTCACTGAAAGAAAATCATGATCCCGTTAAGGTGATTAGGGAAGCCTTAAGTAGGGCACTACTGTATTACTACCCTTTAGCTGGGAGGCTTAGGGAAGGGCCTAACATAAAGCTTAGGGTGACCCATCTTACATGTGGAGGTTTCATACTTGCATTGCGCCTAAACCACACAATGTGTGATGCACCTGGACTGCATCTGTTCCTGAACGCCATTGCGGAGATGGCAAGAGGCGAACATGCACCGTCTCTATTCTACCAGTGTGGGAGAGAGAGCTCTTGTTCACTTGAGATCCACCAAGAATTACATGTGCTCATCATGAATATGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

8.67

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 39 5.6e-06 Transferase family
Transferase PF02458 41 - 90 1.9e-10 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 2 cut(s) 35, 304
AdeI CACNNNGTG 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 72, 101
AflII CTTAAG 1 cut(s) 67
AflIII ACRYGT 2 cut(s) 152, 325
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 101, 133, 294
AluI AGCT 3 cut(s) 101, 133, 294
Alw21I GWGCWC 2 cut(s) 296, 333
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 35, 304
AoxI GGCC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 64, 151
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 2 cut(s) 296, 333
BccI CCATC 2 cut(s) 153, 235
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 190, 223
Bpu10I CCTNAGC 2 cut(s) 110, 134
BpuEI CTTGAG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 101
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 173, 231
BseBI CCWGG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 72, 101
BseMI GCAATG 2 cut(s) 173, 231
BseNI ACTGG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 296, 333
BslI CCNNNNNNNGG 2 cut(s) 72, 101
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 3 cut(s) 79, 296, 333
Bsp143I GATC 2 cut(s) 40, 309
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 121
BspHI TCATGA 2 cut(s) 37, 336
BspPI GGATC 2 cut(s) 35, 304
BspTI CTTAAG 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 173, 231
BsrI ACTGG 1 cut(s) 277
BssMI GATC 2 cut(s) 40, 309
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 84, 264
BstAFI CTTAAG 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 110, 134
BstEII GGTNACC 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 43, 312
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 40, 309
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 3 cut(s) 156, 260, 329
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 23, 284
CciI TCATGA 2 cut(s) 37, 336
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 119
CviAII CATG 5 cut(s) 38, 153, 257, 326, 337
CviJI RGCY 6 cut(s) 65, 101, 109, 121, 133, 294
CviKI_1 RGCY 6 cut(s) 65, 101, 109, 121, 133, 294
DdeI CTNAG 2 cut(s) 110, 134
DpnI GATC 2 cut(s) 42, 311
DpnII GATC 2 cut(s) 40, 309
DraIII CACNNNGTG 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 5 cut(s) 41, 156, 260, 329, 340
FaiI YATR 8 cut(s) 39, 128, 154, 167, 258, 327, 338, 344
FatI CATG 5 cut(s) 37, 152, 256, 325, 336
FriOI GRGCYC 1 cut(s) 296
GlaI GCGC 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 121
HhaI GCGC 1 cut(s) 180
Hin1II CATG 5 cut(s) 41, 156, 260, 329, 340
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 131
HphI GGTGA 2 cut(s) 64, 151
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 3 cut(s) 38, 223, 337
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 30, 110
HpyCH4III ACNGT 2 cut(s) 84, 264
HpyCH4V TGCA 4 cut(s) 173, 203, 214, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 110, 134
Hsp92II CATG 5 cut(s) 41, 156, 260, 329, 340
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 40, 309
LpnPI CCDG 5 cut(s) 87, 192, 219, 236, 290
LweI GCATC 2 cut(s) 190, 223
MaeIII GTNAC 2 cut(s) 5, 139
MalI GATC 2 cut(s) 42, 311
MboI GATC 2 cut(s) 40, 309
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 79, 296, 333
MluCI AATT 1 cut(s) 320
MnlI CCTC 3 cut(s) 99, 152, 242
MseI TTAA 2 cut(s) 48, 68
MslI CAYNNNNRTG 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 40, 309
NlaIII CATG 5 cut(s) 41, 156, 260, 329, 340
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 3 cut(s) 156, 260, 329
PagI TCATGA 2 cut(s) 37, 336
PciI ACATGT 2 cut(s) 152, 325
PscI ACATGT 2 cut(s) 152, 325
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 341
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 48, 68
Sau3AI GATC 2 cut(s) 40, 309
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 3 cut(s) 79, 296, 333
SetI ASST 6 cut(s) 54, 103, 135, 163, 208, 296
SfaNI GCATC 2 cut(s) 190, 223
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 67, 305
SmoI CTYRAG 2 cut(s) 67, 305
Sse9I AATT 1 cut(s) 320
SsiI CCGC 1 cut(s) 236
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 84, 264
TasI AATT 1 cut(s) 320
Tru1I TTAA 2 cut(s) 48, 68
Tru9I TTAA 2 cut(s) 48, 68
TscAI CASTG 2 cut(s) 30, 284
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 154, 353
TspRI CASTG 2 cut(s) 30, 284
Vha464I CTTAAG 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 70
XceI RCATGY 3 cut(s) 156, 260, 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 152, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.