Rorug07G0145700

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000190
Physical Location & Seq
Reverse (-)
11481172 .. 11484185
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0145700.1

Sequence Viewer

Length: 447 bp
ATGGCGTCCAAGCGGATCTTGAAGGAGCTCAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCGCTGGCCCAGTTGCAGAAGACATGTTTCACTGGCAGGCGACAATCATGGGTCCTGCAGACAGTCCCTACGCAGGTGGAGTGTTTCTTGTCACCATACACTTTCCTCCAGACTATCCTTTTAAGCCACCAAAGGTTGCATTCAGGACAAAGGTGTTTCACCCAAACATTAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGTCCTGCGCTGACCATATCGAAGGTATTGCTTTCGATTTGCTCCCTGTTGACTGACCCAAATCCTGATGATCCTTTGGTGCCAGAGATTGCCCATATGTACAAGACCGACAAGAACAAGTATGAGACCACTGCAAGGAGCTGGACCCAGAAGTACGCCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

148

Amino Acids

16.52

Weight (kDa)

7.71

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 5 - 141 6.5e-55 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 13
AclWI GGATC 4 cut(s) 23, 41, 42, 344
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 380, 434
AfeI AGCGCT 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 137, 414
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 22, 268
AluBI AGCT 2 cut(s) 28, 420
AluI AGCT 2 cut(s) 28, 420
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 4 cut(s) 23, 41, 42, 344
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 63, 246
AseI ATTAAT 1 cut(s) 234
AspLEI GCGC 2 cut(s) 68, 289
AspS9I GGNCC 3 cut(s) 71, 116, 423
AsuHPI GGTGA 2 cut(s) 148, 215
AvaII GGWCC 2 cut(s) 116, 423
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 75, 258
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BcoDI GTCTC 1 cut(s) 398
BfaI CTAG 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 2 cut(s) 64, 247
BlsI GCNGC 2 cut(s) 65, 248
Bme18I GGWCC 2 cut(s) 116, 423
BmgT120I GGNCC 3 cut(s) 71, 116, 423
BmiI GGNNCC 3 cut(s) 117, 360, 425
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 23, 156
BpuEI CTTGAG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 414
Bse1I ACTGG 2 cut(s) 74, 101
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 137, 414
BseMI GCAATG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 74, 101
BseXI GCAGC 2 cut(s) 75, 258
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 30
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 137, 414
BsmAI GTCTC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 4 cut(s) 15, 34, 46, 349
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 117, 360, 425
BspMAI CTGCAG 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 4 cut(s) 23, 41, 42, 344
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 2 cut(s) 74, 101
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 4 cut(s) 15, 34, 46, 349
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 128, 276
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 70, 102
BstDSI CCRYGG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 289
BstKTI GATC 4 cut(s) 18, 37, 49, 352
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 4 cut(s) 15, 34, 46, 349
BstMWI GCNNNNNNNGC 3 cut(s) 69, 246, 252
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 75, 258
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 3 cut(s) 15, 34, 46
BstYI RGATCY 3 cut(s) 15, 34, 46
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 94, 281, 408
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 70, 102
CfoI GCGC 2 cut(s) 68, 289
Cfr13I GGNCC 3 cut(s) 71, 116, 423
Csp6I GTAC 2 cut(s) 379, 433
CviAII CATG 3 cut(s) 88, 112, 439
CviJI RGCY 5 cut(s) 28, 72, 190, 420, 444
CviKI_1 RGCY 5 cut(s) 28, 72, 190, 420, 444
CviQI GTAC 2 cut(s) 379, 433
DpnI GATC 4 cut(s) 17, 36, 48, 351
DpnII GATC 4 cut(s) 15, 34, 46, 349
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 116, 423
Eco47III AGCGCT 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 3 cut(s) 91, 115, 442
FaiI YATR 8 cut(s) 89, 113, 161, 296, 375, 377, 402, 440
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 114
FatI CATG 3 cut(s) 87, 111, 438
FauNDI CATATG 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 64, 247
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 64, 247
FspBI CTAG 1 cut(s) 445
GlaI GCGC 2 cut(s) 67, 288
GluI GCNGC 2 cut(s) 64, 247
GsuI CTGGAG 2 cut(s) 23, 156
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 72
HhaI GCGC 2 cut(s) 68, 289
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 91, 115, 442
Hin6I GCGC 2 cut(s) 66, 287
HinP1I GCGC 2 cut(s) 66, 287
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 1 cut(s) 280
HphI GGTGA 2 cut(s) 148, 215
Hpy166II GTNNAC 1 cut(s) 330
Hpy188III TCNNGA 5 cut(s) 19, 40, 173, 208, 344
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 16, 262, 295
HpyCH4III ACNGT 2 cut(s) 128, 276
HpyCH4V TGCA 5 cut(s) 63, 80, 122, 203, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 246, 252
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 91, 115, 442
HspAI GCGC 2 cut(s) 66, 287
Kzo9I GATC 4 cut(s) 15, 34, 46, 349
LmnI GCTCC 3 cut(s) 25, 326, 417
Lsp1109I GCAGC 2 cut(s) 75, 258
MaeI CTAG 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 17, 36, 48, 351
MboI GATC 4 cut(s) 15, 34, 46, 349
MboII GAAGA 1 cut(s) 95
MflI RGATCY 3 cut(s) 15, 34, 46
MhlI GDGCHC 1 cut(s) 30
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 3 cut(s) 60, 67, 180
MseI TTAA 2 cut(s) 186, 234
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 69, 246, 252
NcoI CCATGG 1 cut(s) 438
NdeI CATATG 1 cut(s) 375
NdeII GATC 4 cut(s) 15, 34, 46, 349
NlaIII CATG 3 cut(s) 91, 115, 442
NlaIV GGNNCC 3 cut(s) 117, 360, 425
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 128
PciI ACATGT 1 cut(s) 87
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 65, 248
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 117, 360, 425
PspPI GGNCC 3 cut(s) 71, 116, 423
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 3 cut(s) 15, 34, 46
RsaI GTAC 2 cut(s) 380, 434
RsaNI GTAC 2 cut(s) 379, 433
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 186, 234
SatI GCNGC 2 cut(s) 64, 247
Sau3AI GATC 4 cut(s) 15, 34, 46, 349
Sau96I GGNCC 3 cut(s) 71, 116, 423
SchI GAGTC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 30
SetI ASST 7 cut(s) 30, 59, 142, 201, 219, 306, 422
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 116, 423
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 445
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 128, 276
TaqI TCGA 2 cut(s) 299, 314
TaqII GACCGA 1 cut(s) 401
TatI WGTACW 1 cut(s) 378
Tru1I TTAA 2 cut(s) 186, 234
Tru9I TTAA 2 cut(s) 186, 234
TscAI CASTG 3 cut(s) 101, 281, 415
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 63, 246
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 3 cut(s) 101, 281, 415
VpaK11BI GGWCC 2 cut(s) 116, 423
VspI ATTAAT 1 cut(s) 234
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.