Rmu_ssc0000387.1_g000031

Benzyl alcohol

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000387.1
Physical Location & Seq
Forward (+)
150085 .. 150570
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000387.1_g000031.1.cds

Sequence Viewer

Length: 486 bp
atggcatcccctcctacctccctagtgttcaaagtgcaaagacggcagccggagctggtttcacctgctaaacccacaccgcgagagctgaaacatctttctgatatcgatgatcaagaaggtcttcgatttcagattcccgtcatacagttttaccgttatgatccctctatgaaaggaaaggactgcgtgaaagtgattcgagaggcgatatcacaaacactagtgttttactacccttttgctggtaggcttagagaggggcctggccgtaagcttatggtggactgtaccggcgagggtattctcttcattgaggccaatgctgatgttacgctccgccaatttggtgatgctcttcaacctcccttcccttgcttggaggagcttctctataatgttcctggatccgatggggttcttaattgcccactcttgctgattcaggtaattaaaccattaatcatccatcatactcgtacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.19

Weight (kDa)

7.67

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AccII CGCG 1 cut(s) 82
AciI CCGC 2 cut(s) 80, 340
AclWI GGATC 3 cut(s) 158, 402, 415
AcoI YGGCCR 1 cut(s) 268
AfaI GTAC 2 cut(s) 292, 481
AfiI CCNNNNNNNGG 2 cut(s) 245, 379
AgsI TTSAA 2 cut(s) 31, 362
AhlI ACTAGT 1 cut(s) 223
AjnI CCWGG 2 cut(s) 265, 403
AluBI AGCT 4 cut(s) 55, 88, 277, 388
AluI AGCT 4 cut(s) 55, 88, 277, 388
AlwI GGATC 3 cut(s) 158, 402, 415
AoxI GGCC 3 cut(s) 263, 268, 318
ApeKI GCWGC 1 cut(s) 46
AseI ATTAAT 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 54, 362
BamHI GGATCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 407, 477
BceAI ACGGC 2 cut(s) 59, 255
BciT130I CCWGG 2 cut(s) 267, 405
BclI TGATCA 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 2 cut(s) 23, 224
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 267, 405
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 264, 409
BmrFI CCNGG 2 cut(s) 267, 405
BmsI GCATC 2 cut(s) 14, 343
BpiI GAAGAC 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 379
Bse118I RCCGGY 1 cut(s) 293
BseBI CCWGG 2 cut(s) 267, 405
BseCI ATCGAT 1 cut(s) 108
BseGI GGATG 2 cut(s) 5, 465
BseLI CCNNNNNNNGG 2 cut(s) 245, 379
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 265, 270, 320
BshVI ATCGAT 1 cut(s) 108
BsiSI CCGG 2 cut(s) 50, 294
BsiWI CGTACG 1 cut(s) 479
BslI CCNNNNNNNGG 2 cut(s) 245, 379
BsnI GGCC 3 cut(s) 265, 270, 320
Bsp143I GATC 3 cut(s) 112, 163, 407
BspACI CCGC 2 cut(s) 80, 340
BspANI GGCC 3 cut(s) 265, 270, 320
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 264, 409
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 3 cut(s) 158, 402, 415
BspQI GCTCTTC 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssMI GATC 3 cut(s) 112, 163, 407
Bst2UI CCWGG 2 cut(s) 267, 405
Bst4CI ACNGT 3 cut(s) 150, 158, 290
Bst6I CTCTTC 2 cut(s) 314, 363
BstBAI YACGTR 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 5, 465
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 3 cut(s) 115, 166, 410
BstMBI GATC 3 cut(s) 112, 163, 407
BstMWI GCNNNNNNNGC 2 cut(s) 43, 52
BstNI CCWGG 2 cut(s) 267, 405
BstSCI CCNGG 2 cut(s) 265, 403
BstSNI TACGTA 1 cut(s) 483
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 265, 270, 320
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 2 cut(s) 5, 465
BveI ACCTGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 291, 480
CviJI RGCY 9 cut(s) 49, 55, 88, 253, 265, 270, 277, 320, 388
CviKI_1 RGCY 9 cut(s) 49, 55, 88, 253, 265, 270, 277, 320, 388
CviQI GTAC 2 cut(s) 291, 480
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 114, 165, 409
DpnII GATC 3 cut(s) 112, 163, 407
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 314, 363
EarI CTCTTC 2 cut(s) 314, 363
EciI GGCGGA 1 cut(s) 329
Eco105I TACGTA 1 cut(s) 483
Eco32I GATATC 2 cut(s) 106, 213
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 265, 403
EcoRV GATATC 2 cut(s) 106, 213
FaiI YATR 6 cut(s) 146, 162, 173, 281, 396, 474
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 2 cut(s) 23, 224
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 3 cut(s) 265, 270, 320
HapII CCGG 2 cut(s) 50, 294
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 136, 199, 442
HpaII CCGG 2 cut(s) 50, 294
HphI GGTGA 2 cut(s) 54, 362
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 103, 135, 412
Hpy188III TCNNGA 2 cut(s) 116, 203
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 113, 379
HpyCH4III ACNGT 3 cut(s) 150, 158, 290
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 52
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 3 cut(s) 112, 163, 407
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 52, 342, 385
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 14, 343
MaeI CTAG 2 cut(s) 23, 224
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 114, 165, 409
MboI GATC 3 cut(s) 112, 163, 407
MboII GAAGA 3 cut(s) 116, 301, 350
MflI RGATCY 1 cut(s) 407
MluCI AATT 3 cut(s) 344, 424, 450
MnlI CCTC 9 cut(s) 21, 28, 178, 199, 253, 292, 310, 375, 376
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 3 cut(s) 423, 453, 461
MspI CCGG 2 cut(s) 50, 294
MspR9I CCNGG 2 cut(s) 267, 405
MvaI CCWGG 2 cut(s) 267, 405
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 43, 52
NdeII GATC 3 cut(s) 112, 163, 407
NlaIV GGNNCC 2 cut(s) 264, 409
PaqCI CACCTGC 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 3 cut(s) 136, 199, 442
Pfl23II CGTACG 1 cut(s) 479
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 483
PshBI ATTAAT 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 265, 403
PspGI CCWGG 2 cut(s) 265, 403
PspLI CGTACG 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 264, 409
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 2 cut(s) 292, 481
RsaNI GTAC 2 cut(s) 291, 480
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 423, 453, 461
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 112, 163, 407
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 267, 405
SfaNI GCATC 2 cut(s) 14, 343
SnaBI TACGTA 1 cut(s) 483
SpeI ACTAGT 1 cut(s) 223
Sse9I AATT 3 cut(s) 344, 424, 450
SsiI CCGC 2 cut(s) 80, 340
SspMI CTAG 2 cut(s) 23, 224
StyD4I CCNGG 2 cut(s) 265, 403
TaaI ACNGT 3 cut(s) 150, 158, 290
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 108, 127, 202
TasI AATT 3 cut(s) 344, 424, 450
TfiI GAWTC 3 cut(s) 136, 199, 442
Tru1I TTAA 3 cut(s) 423, 453, 461
Tru9I TTAA 3 cut(s) 423, 453, 461
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 188, 301
VspI ATTAAT 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 2 cut(s) 23, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.